Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05338 ATGCAACATGTACCTGCAAATGGAATTTCTCATGCTGGTATTAATACTCAGGTTGTTCAATATGAACCACCTCCACAACTTGGCCCTGGACATGCTATGGTGCCACCACCTGCTTATCCATATCTGGATCCATACTACAAAAGCATGTTTGCTCCCTATGACGCACAAGCTTATCTGCCACAGCCCTATGGTAGACACCCAATGACCAATCTTCAGCTAATGGGAATTCAGCATACTGATGTTCCTTTTCCTTCTGATGCAGTCGAGGAGCCTGTATTTGTCAATGCAAAATAG 294 0.4422 MQHVPANGISHAGINTQVVQYEPPPQLGPGHAMVPPPAYPYLDPYYKSMFAPYDAQAYLPQPYGRHPMTNLQLMGIQHTDVPFPSDAVEEPVFVNAK 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05338 97 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 97 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05338 Vifa-Chr1 830540160 830540453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05338 39 97 CCAAT-HAP2 Transcription Factor Family AT2G34720 64.407 2.40e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05338 K08064 - gmx:100809036 149.058