Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05337 ATGGAATACAGCAGTTGGATTCTCGTGGCAGACGAAAGAAATGCTTATGGTACATTAGCAAATCATTCATCGGTTTTCTCGGACAATGTACAAAAGAGAGGCCGCGATGAATTATGCAATCAACCTGTTGGATTTAATAGAGACTGGCGTGATCATCCTGAAATGGAATCAATTCTCCGCGAAGGTGCTGCTTCAAAGGAAGAATATATGAACCTGGACACATTGCCTCGCGGTGTGCAATCTGTATTGGACAATTCTACGGCTCATGTTACTGGTTGTTATAGCATGCCAAAAGGGGGACAATATGACACTTCTACTGTTCATGACCTGCCTTGTTTTCCTGTTGACCTTTCATCAATCCCCCCAGTTGCTAATATGGATGTGTGTAGTAACTTACCTGTTTATGGTGGTGGAAACTATTTGGATGCTAACACCAGATCTATTAACAACTATTTTCCTCATCAACACACAAATAATTGTGATACCGACATACTACAACCTACCAAAAGAAAACAAATGATTTATGGATTTTCCAATCCTTTTCGTGGCAGGAACTCTTGTTTAGAATTGCAAGATGCATGGAAATGCCAACCACAAATGCTGGATTTTCAGAAGAGTTCTGCTGTAAGACACGATTTTATTGATGTCTTGTCTGGTAATACCGAACCCCTTCCAGTGCTACCTACCAAAAGACTCAAAACACCGGATTCATATTTTGGTGTATCTTTGAACAACGATCAATGGAATAGCCAGTTGGTTCAACCTTATTCCTCTCAAACACCTTTGGAAGTGCAGCAACAGTCACAACTTCCCCCCTTTTCTTCTTTCAATTTTGAGAGTAACCGGGAAGAACTTACAAATCCGATGTTTCATTCTATGGGAATCAGAGGGATAAACAACAATGAGGCAGGTGATACACTTGAAAGCGATGATGTGATGGAAATCAGCTCAAAGGAATTTGTCGATAGTTTGAAATCCAGGAAGCGTACTCTCAACATGGATCCTTTTGATACTGGTGGAGAGGTTATGCAGGGCTTAGCTGAATTCAACCGTGGCTTTACATTGAACTCCAACCTTCCTACTCTCACCGATGATGTTTTTCTTATTGATGGGGAAGATATACAAGACACAACTGAGTTCTGGAAAAACACCAAAAAGAAAGTTGATGAGCCAACAACTGATCAAGAGACCCATACTATAGTTAATAAGATTGACAGCGGAAAATCAATGGAAATTGACATTGGATCGAATTCCATTATGCATGCTCTCTTAAACAAGGTTCCTATTCCTATTGATGTAGAGGACAAACATGACATAATTGGATTCAACCAAGAGGAGAAAGCTGTTAAAAGGGAAGTCAGTGAGCCAAAAGTTGTCGTTGATGTTGTTTCGTTGATTGATTTTTTCACACATGATCAAATAACAGAACATATTAACAGTCTGAGAAAGGAACCTCTTCAGATTACAACTGAAGATGGAACAGGAATTGATGCAAACACATGCCAATTATGTGAAAGGGAAAATCTTTACTTTGCACCGGTACCAATTTTTTGTATACGCTGTGCCCACTCCATCAGGAGAAGAAATATATATTTCTGTAGAAAAGATGAGGAATTTGATGCAGAGCGTTGCGTTTGCTCCTCCTGTTATAATGCATCTAAAGGCGGGTGCATTGCATTCAACGGGACATCTGTTTCTAAGGCAAATCTTGAAAAAAAGAAAAATGATGAAGTACTTGAAGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAGTATGTGCACTCTACAACAGCCAAAAAGATTTGGGCTGCAATGTTGATTATATATGTGCTGTTTGCCGCTTAAGAGAAATTGAAGATGGAGTGCATGTTCCCTTACAAAGGACTACTGTTTATGGTGCTAAGGACTTACCAAGTACCGTGCTTAGTGACCACCTCGAGAAAAGACTTTTTAAGCGTCTCATGGAAGTGAGAGTTGATGGGGAAAAAGTTAAAGGAAGTGAGAATCTTGATAAGGTTTTAGCAGCAGAAAATATTTCTATTAGAGAAGTGTTATCTGTCGACAAACAATTGAAAGTGAAGAAGCAGTTTCTTGACATCATCCCAGAAAGGAATTACCCAGTTGAATTCTCTTATAGATTAAGAGTTATACTTCTGTTTCAGAAGATTGATGGAGCAGATATATGCATTTTTGGACTGTATGTCCAAGAGTTTGGCTCTGAATGTGGCAATCCGAATCAGCGTTGTGTGTACATTTCATATCTTGATTCTGTCAAATATTTTAGGCCTCAAAGAGTGATTGTGGAAGGAGAAGCACTTCGTACCTTCGTTTACCATGAGATATTGATTGGATACCTTGAATTTTGTAAGAAAAGGGGTTTCTCAACTTGTTACATATGGGCATGTCCTCCTTCAAAGCGGGGGGATGATTATATACTATATTGTCATCCCAAAGAGCAAAAGACTCCAAACAAGGATAAGCTACGCTCTTGGTATCATTCAATGCTAAAAAAGGCTACTGAAGAAAAAATTGTTGTTGGTTTAACTAACATATATGATCATTTCTTTGTTCCTACCGGAAAAAAGGGCTCCAAAGTGACAATTTATCGTTTGCCATACTTTGATGGAGACTTTTGGTGTGGTTCTGCTATGGAAAAAGCAAGGACAATTGAAAAACAGAGTAGAGGAGACTATGAAAATATGTTAAAGAAACAAGTGTCAACTAGAGCTTTAAAGAGCATGGGACATGTCAATCCTTCGAAAGACGCTGCTAAAGACATTCTGGTGATGCAAAAATTGGGTGAAGATATATTTCCTACCAAGGAAAATTTCATTGTAGCTCACTTACAGTATTCATGCATACACTGCTGTGAAGTGATAATGTCTGGGAAGCGGTGGTTTTGCACTGAATGCAAGAAATTTCAAGAGTGTGAAAGATGCCATAGTTCAAATGAACACGCCTTAAAGAACGGTGTAGTGCATCCACTTCGTGAGGCCGTTGTTGATGATATCCCCTCCAACACTAAGCATAACGATACCATCCTTGAGAATGGATTATTTGAAGATAGGAACAACTTTTTGAGCTTCTGCCAGAAGTATCAGTTTCAATTTGACACACTCCGACGTGCTAAGTATTCCTCAATGATGATCCTCTACCATCTAAACAATCCTAGTCCTACGAATTTTGGAAAACGTTGCAGTATTTGTTGCGCACACAATGTGTTCCAAAAGTGCTGGAAATGTGAGGTTTGTCCAGATTGTACCATTTGCTCTGCATGCTATAAGGATAGAGGTGCTGACTGCCATGAACACAAGTTGACTCAAAATGAACACAAGTTGGCTGAAAATAATTCAACATCACAACCTGATAATCAAGACTCTGATGGGAAAATTATGCTGAAGATGCTGAAACTGGAGGGTTTTTTGAAGAATGTATTTCAACTTCGGAATCATGAGTCACTAAGGAAAAAGTTGCTGAAACTAGAGATGAAGTTGAAGCATGCATATCAATGTTCTGCAACTAGTGCTAAACCTTGCTCTGATACATCATGTTGTCAATTCAAGAAGCTTTTAAAACATGCCATAAGTTGCACAGCTCATATTCGTGGGGGATGCGAGTATTGTGAAAAGATATGGACTATACGAATTTCTCACTCCATGGATTGCAAAGACTCAGAATGTATAATACAACATTGCAGCATGCTGAAGAAGCGTTTAGAACATAGAAGATTGCGTTCGAAATCTTGA 3759 0.3903 MEYSSWILVADERNAYGTLANHSSVFSDNVQKRGRDELCNQPVGFNRDWRDHPEMESILREGAASKEEYMNLDTLPRGVQSVLDNSTAHVTGCYSMPKGGQYDTSTVHDLPCFPVDLSSIPPVANMDVCSNLPVYGGGNYLDANTRSINNYFPHQHTNNCDTDILQPTKRKQMIYGFSNPFRGRNSCLELQDAWKCQPQMLDFQKSSAVRHDFIDVLSGNTEPLPVLPTKRLKTPDSYFGVSLNNDQWNSQLVQPYSSQTPLEVQQQSQLPPFSSFNFESNREELTNPMFHSMGIRGINNNEAGDTLESDDVMEISSKEFVDSLKSRKRTLNMDPFDTGGEVMQGLAEFNRGFTLNSNLPTLTDDVFLIDGEDIQDTTEFWKNTKKKVDEPTTDQETHTIVNKIDSGKSMEIDIGSNSIMHALLNKVPIPIDVEDKHDIIGFNQEEKAVKREVSEPKVVVDVVSLIDFFTHDQITEHINSLRKEPLQITTEDGTGIDANTCQLCERENLYFAPVPIFCIRCAHSIRRRNIYFCRKDEEFDAERCVCSSCYNASKGGCIAFNGTSVSKANLEKKKNDEVLEEPWVECNKCKRWQHQVCALYNSQKDLGCNVDYICAVCRLREIEDGVHVPLQRTTVYGAKDLPSTVLSDHLEKRLFKRLMEVRVDGEKVKGSENLDKVLAAENISIREVLSVDKQLKVKKQFLDIIPERNYPVEFSYRLRVILLFQKIDGADICIFGLYVQEFGSECGNPNQRCVYISYLDSVKYFRPQRVIVEGEALRTFVYHEILIGYLEFCKKRGFSTCYIWACPPSKRGDDYILYCHPKEQKTPNKDKLRSWYHSMLKKATEEKIVVGLTNIYDHFFVPTGKKGSKVTIYRLPYFDGDFWCGSAMEKARTIEKQSRGDYENMLKKQVSTRALKSMGHVNPSKDAAKDILVMQKLGEDIFPTKENFIVAHLQYSCIHCCEVIMSGKRWFCTECKKFQECERCHSSNEHALKNGVVHPLREAVVDDIPSNTKHNDTILENGLFEDRNNFLSFCQKYQFQFDTLRRAKYSSMMILYHLNNPSPTNFGKRCSICCAHNVFQKCWKCEVCPDCTICSACYKDRGADCHEHKLTQNEHKLAENNSTSQPDNQDSDGKIMLKMLKLEGFLKNVFQLRNHESLRKKLLKLEMKLKHAYQCSATSAKPCSDTSCCQFKKLLKHAISCTAHIRGGCEYCEKIWTIRISHSMDCKDSECIIQHCSMLKKRLEHRRLRSKS 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05337 1252 SUPERFAMILY RING/U-box 1046 1101 - -
Vifa1g05337 1252 Gene3D - 949 999 IPR043145 -
Vifa1g05337 1252 ProSitePatterns Zinc finger PHD-type signature. 544 617 IPR019786 -
Vifa1g05337 1252 ProSiteProfiles Zinc finger TAZ-type profile. 1155 1239 IPR000197 -
Vifa1g05337 1252 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 635 1063 IPR031162 GO:0004402
Vifa1g05337 1252 SMART TAZ_2 1156 1237 IPR000197 -
Vifa1g05337 1252 SUPERFAMILY TAZ domain 1154 1240 IPR035898 -
Vifa1g05337 1252 SUPERFAMILY RING/U-box 932 992 - -
Vifa1g05337 1252 PANTHER CBP/P300-RELATED 397 1245 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05337 1252 SUPERFAMILY FYVE/PHD zinc finger 580 620 IPR011011 -
Vifa1g05337 1252 Pfam Histone acetylation protein 674 885 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05337 1252 SMART KAT11_2 669 964 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05337 1252 Pfam TAZ zinc finger 1168 1236 IPR000197 -
Vifa1g05337 1252 Gene3D TAZ domain 1152 1252 IPR035898 -
Vifa1g05337 1252 ProSiteProfiles Zinc finger ZZ-type profile. 952 1013 IPR000433 GO:0008270
Vifa1g05337 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 617 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05337 Vifa-Chr1 830428082 830434369 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa1g05337 HAT_KAT11 4.5e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05337 K04498 - psat:127094503 1333.93