Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05334 ATGGCTACTAGTATGATCTCTTCACAAGATAACCAAAATGCCCTTATTTACCCTTCTTCTATGCAAATGGTTTATGCAGACCTTGGATCTCTCTCTCTTGGTTCAAACTATGGTGTTGTTTCAACCTCAAACAAAGAGAGTTATGGTTGCAAGAGTTTTGTGATGGAGGATGATATGGAAGGAAAAGGCTCTTATTGTAGTGAGGAAACAAACCCTAATGAGAATAATGGAAGTGGGAAAGAGGAAGATAATGGACAGTCTAGTAAATGTGCAAGAGGACATTGGAGACCTGCTGAAGATTCCAAGCTTAAGGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAATCTCATTGCTGAAAAGTTAGAAGGAAGATCAGGCAAGAGTTGCAGGCTAAGATGGTTCAACCAACTGGATCCAAGAATAAACAGAAGAGCATTCAATGAAGAAGAGGAAGAGAGACTAATGCAAGCACATCGAATTTACGGAAACAAATGGGCCATGATAGCAAGACTATTTCCAGGAAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGGGAACAATCCAGTGCATACAGGAGAAGAAGGTTAATGAACCAAACTAGTGCTTACAGAAGAATGGATCAAAATCCAAGCTTTGTCTGCAGGGACACCACAACAATGGAGACAGAACCATCACCACCTTATTTTCTCAATGGAGCCCCACTTGGGAATAGTGTATCCATTTTTCCTTATGCTGCTTCTTTCCAACATGGTGCTCATGGTGGTGGGGTTGAGTATGGTTTTAATGGTTTACCTCACATGAGTGGTGAGAGAGAAGCTTTGCAAGGACCCCTACATGTTGGTTTCTATGCTCATGCTCAACAAGCACCTTTTGATTTCTTCTCTGGTAGTAGAAGCAATGAAATGGTGGAAGAATCATTGAATCAGATAAGATATTGGGATGGGACTAATAATGAACATCAACAGCAAATATCAAGTTTCCACCATCATTATCCTCAACAACAATATCTCATGTCAATGCAACAACAACAACAACACCAACAACAAAACAATCACAATTTCAACCGTTTCTCAAATTCCTTAGCATCATCAACACCTCATAACAACACAGAAAACAGTGGAAAAGTTGTGATTGATGACACACATGAAGCTGTTGAAACTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1227 0.3993 MATSMISSQDNQNALIYPSSMQMVYADLGSLSLGSNYGVVSTSNKESYGCKSFVMEDDMEGKGSYCSEETNPNENNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFNEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLMNQTSAYRRMDQNPSFVCRDTTTMETEPSPPYFLNGAPLGNSVSIFPYAASFQHGAHGGGVEYGFNGLPHMSGEREALQGPLHVGFYAHAQQAPFDFFSGSRSNEMVEESLNQIRYWDGTNNEHQQQISSFHHHYPQQQYLMSMQQQQQHQQQNNHNFNRFSNSLASSTPHNNTENSGKVVIDDTHEAVETPQFFDFLGVGAT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05334 408 FunFam MYB transcription factor 145 216 - -
Vifa1g05334 408 ProSiteProfiles Myb-like domain profile. 139 189 IPR001005 -
Vifa1g05334 408 SMART sant 143 191 IPR001005 -
Vifa1g05334 408 SMART sant 91 140 IPR001005 -
Vifa1g05334 408 CDD SANT 95 136 IPR001005 -
Vifa1g05334 408 Gene3D - 92 143 - -
Vifa1g05334 408 PANTHER MYB PROTEIN-RELATED 92 351 - -
Vifa1g05334 408 Pfam Myb-like DNA-binding domain 95 155 - -
Vifa1g05334 408 CDD SANT 146 186 IPR001005 -
Vifa1g05334 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 138 IPR017930 -
Vifa1g05334 408 MobiDBLite consensus disorder prediction 61 94 - -
Vifa1g05334 408 MobiDBLite consensus disorder prediction 66 84 - -
Vifa1g05334 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 193 IPR017930 -
Vifa1g05334 408 SUPERFAMILY Homeodomain-like 91 185 IPR009057 -
Vifa1g05334 408 FunFam MYB transcription factor 92 143 - -
Vifa1g05334 408 ProSiteProfiles Myb-like domain profile. 87 138 IPR001005 -
Vifa1g05334 408 MobiDBLite consensus disorder prediction 348 383 - -
Vifa1g05334 408 Gene3D - 145 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05334 Vifa-Chr1 829455230 829457624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05334 18 206 MYB Transcription Factor Family AT1G69560 57.143 3.51e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g05334 Myb_DNA-bind_6 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05334 K09422 - gmx:100789305 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05334 1 829455230 829457624 Vifa1g05334 1 829455230 829457624 ECH