Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05333 ATGTTCCCTTATAGTTCAAACCCTTATCCTTCTTTTCTTCCTTCATCTTCTTCATCTTCATCTTCACTTTTTCCTTTTCCTTTTCTTAATCCTGATAATGCTTCTTCAAACAACAATAACAACACACTTTTTCATGATCCATTTTCTATTCCCTACATTCCAACTCACCATCATCATTCTCATTCTCATCCTCATCATCATCTTCTTCATAACATTACAAATATTCCAGAAACCCTAACAAATTTGGCTGTTTCACAAGAGAATCATAATAATAGTCACAACAATAATAACAATATTGCGGTTTCGATGCCGAAACAAGATCTTTTAGCTCTTGGTGGTGGTTCTCACTATGGAATTTCTTGTTTCCTTACTAAGAAACCGGCGAAAAAAGATAGGCACAGCAAGATTTACACTTCTCAAGGTTTGAGAGATCGTAGGGTTAGGCTTTCGATCGAGATCGCTCGAAAGTTCTTCGATCTTCAAGAGATGTTAGGGTTTGACAAAGCTAGCAACACACTTGATTGGCTTTTTACTAAATCTAAGAAAGCAATTAAGGATCTAACAAAAAGCAAGCAAAGAAACAACAATAGTGAAGTTGGTGGTGATGCTAAAAGCTTCACATCTTCTTCAGATTGTGAAGATTCAGAAGTTGCTACTAATGATTCCTTAAACCTACAAAAGGAGGGTGCAGGAAGTAAAATGGAAGAGAAGAAGTTGAAAAGGGTTCAGATCAAAGAACCTGCTTGTGTTAGAGCAAGTAAGATGAAGGAGTCAAGAGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGTAACAAGATTTCTATAAGGGGGGTGCAGGAAGTAGAATTGAAGAAAAAGTATGAAAATAATAGTAATAATAATCTTCAAGCTTTTCACCAATCAAGATCTTCATCACAAGATCATCAACTTGTGACTAGTAATGAAGCACAAAGAGATAATTTTAATGTTATTGAAGAATCAATTGTGATTAAAAGAAAGTTGAAGCCTTCTTTGATGCTTCATCATCATAATCATCATCACCATCAACCAAACCATGAGATCCCTAAGGAAGCAACAAGTTTCAACAACAATGGTGATTATAATTTCTTGCCTAATTCATCTCCAAATTGGGATGCTAATAATGCTACTTCTTCCACTAATAGATCCAGCTTTTGTGCAATAGCTAGCATGAATCTTTCTACAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCAGCAATCCACGTCTACATTAG 1263 0.3579 MFPYSSNPYPSFLPSSSSSSSSLFPFPFLNPDNASSNNNNNTLFHDPFSIPYIPTHHHHSHSHPHHHLLHNITNIPETLTNLAVSQENHNNSHNNNNNIAVSMPKQDLLALGGGSHYGISCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQEMLGFDKASNTLDWLFTKSKKAIKDLTKSKQRNNNSEVGGDAKSFTSSSDCEDSEVATNDSLNLQKEGAGSKMEEKKLKRVQIKEPACVRASKMKESREKARARARERTSNKISIRGVQEVELKKKYENNSNNNLQAFHQSRSSSQDHQLVTSNEAQRDNFNVIEESIVIKRKLKPSLMLHHHNHHHHQPNHEIPKEATSFNNNGDYNFLPNSSPNWDANNATSSTNRSSFCAIASMNLSTGLQIFGKSWEECSNPRLH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05333 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 125 372 IPR005333 GO:0003700
Vifa1g05333 420 Pfam TCP family transcription factor 128 274 IPR017887 -
Vifa1g05333 420 MobiDBLite consensus disorder prediction 188 271 - -
Vifa1g05333 420 MobiDBLite consensus disorder prediction 193 227 - -
Vifa1g05333 420 MobiDBLite consensus disorder prediction 230 271 - -
Vifa1g05333 420 ProSiteProfiles R domain profile. 256 273 IPR017888 -
Vifa1g05333 420 ProSiteProfiles TCP domain profile. 129 187 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05333 Vifa-Chr1 829410999 829413100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05333 124 275 TCP Transcription Factor Family AT1G67260 44.586 3.12e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g05333 TCP 4.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05333 - - cam:101499957 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05333 1 829410999 829413100 Vifa4g03521 4 1103334584 1103335895 ECH
Vifa1g05333 1 829410999 829413100 Vifa1g05333 1 829410999 829413100 ECH