Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g05330 | ATGGATCCTCCACGCCGAGCACCCCGCACCATAATCGACCCCGTCCCTAAATTCCGTCAAGTCGGTTTCTTCGCTCCCGGAGCCCCACCCGACCGTTCTCTCTCGGGTCCACCCGACCCGTCTCACTCTTCTCACCCTATCGCCGACACCTCCGCTTCTCTTTCACCTGTTATGATCCCTCCGCCGCGTCATCTTTCTGATAACCTAACGATGCACGCTCGGTCCGCCGCGTTGCCTCGCCGTGCTGAGTCGATTACTGTTGGTGGGAGTAACTCTGATGCTCCGGTTTCGCCGGCGCCGTCGTCGTCGTATTCGAGTAGGGTTGTTGTTGGTGGTGACAGAGGGTTTTTTGATGGGAAGGGGAGTGATGCTGGGAAGGTTGTGGCGTCTTCGTTTCCGAGAGGGGGGTTTGATTTGACGGCGTTGAAGGGGAATGGTGGTGGTGTTGTTCCAGCGAGTGGGTTGACTACTGTTTCTGTTGTGAATGATTCGCTTGGGATTCCTGAAAAAGAAAAAGCAAACAAAGGAGGAGGGTCAGCTGGGGAAATGAAAGACCAATCTACTAATTCAAAACAGGAGAAACCTAAACTCACAAAAGCAGAAAGACGTGCAATTCAAGAAGCTCAACGAGCTGCAAAGGCTGCTGCAAAAGGTGAAGGAAATAAGGCGTCTGCAACTGCTACATCAGCGAATGCAAAACCCGCTAAAGCAGTAAAGCCTGCACAGAAAGCTGATAATGCATCAGTTGCAGCCACTGAGAAGAAGGGGAGTGATTTTCCCCATGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCTTGCAGTATGATGACAAGAGCCGGGTGGAGAAAGCTAAACGTCGTTCTGTAGTGAAACACACTGAGGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAATATGAACATGGGAGTCAGCTTCCAGATCTTGAGGCAAAGTTTTTCGATCTTGAGGCGTTGCATCCTGCTGTTTATAAGGTGGGTTTGCAGTACATATCTGGAGATATATCTGGTGGCAATGATCGTTGTATTGCAATGCTCCAAGCATTTCAAGAGGCCATCAAAGATTACAAGGTTCCACCTGAGAAGAGTCTCGGGAGAGATTTGACAGCAAAAATTGGTAGTTATGTATCGTTTCTTAATGAGTGCCGACCTTTGTCAATCAGTATGGGAAATGCAATTAGATTTCTCAAGAGTCAGATAGCCAAGCTACCTTTAACCTTGTCTGAGTCAGAAGCAAAAACTTCTCTCCAGTCAGATATTGAGCGTTTTATAAGTGAGAAGATCATACTTGCCAACAAGGTGATAGTCAAGCACGCCGTCACCAAAATAAGAGATGGGGATGTTCTTCTGACATACGGGTCATCATTGGCAGTTGAAATGATTCTTTTACATGCACACGAATTAGGAAAACAATTTCGTGTTGTGATAGTCGACTCTCGTCCAAAGCTTAGAGGCCAACAGTTACTCCGCAGGCTTGTGGAGAAAGGTGCTGAATCAATACTCTCTAACGGAACGGTATATTCAAGAGTGGGGACTGCAAGTGTTGCAATGGTTGCTCATGCATCTCGGGTACCAGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAAAGGGTACAGCTGGATTCAATTTGCTCGAATGAACTTGGTGATCCAGATGCCATTTCAAATGTTCAGGGTAGAGTGGATGTCAACCACTTGGATGGTTGGTCCGATATTGAAAATCTGCAACTTCTAAATCTGATTTATGATGCAATGCCTTCAGATTATGTTTCAATGATAGTCACTGATTATGGCATGGTCCCCCCCACAAGTGTACCTGTAATTGTAAGAGAATATGGGAGAGAACAGGTCTGGATATAA | 1890 | 0.4656 | MDPPRRAPRTIIDPVPKFRQVGFFAPGAPPDRSLSGPPDPSHSSHPIADTSASLSPVMIPPPRHLSDNLTMHARSAALPRRAESITVGGSNSDAPVSPAPSSSYSSRVVVGGDRGFFDGKGSDAGKVVASSFPRGGFDLTALKGNGGGVVPASGLTTVSVVNDSLGIPEKEKANKGGGSAGEMKDQSTNSKQEKPKLTKAERRAIQEAQRAAKAAAKGEGNKASATATSANAKPAKAVKPAQKADNASVAATEKKGSDFPHEKDRKKDAPQPRLQYDDKSRVEKAKRRSVVKHTEARNRVELFRHLPQYEHGSQLPDLEAKFFDLEALHPAVYKVGLQYISGDISGGNDRCIAMLQAFQEAIKDYKVPPEKSLGRDLTAKIGSYVSFLNECRPLSISMGNAIRFLKSQIAKLPLTLSESEAKTSLQSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSLAVEMILLHAHELGKQFRVVIVDSRPKLRGQQLLRRLVEKGAESILSNGTVYSRVGTASVAMVAHASRVPVIVCCEAYKFHERVQLDSICSNELGDPDAISNVQGRVDVNHLDGWSDIENLQLLNLIYDAMPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI | 629 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g05330 | 629 | Gene3D | - | 344 | 438 | IPR027363 | - | |
Vifa1g05330 | 629 | Gene3D | - | 503 | 622 | IPR042529 | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 37 | 51 | - | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 166 | 291 | - | - | |
Vifa1g05330 | 629 | Pfam | Initiation factor 2 subunit family | 344 | 505 | IPR000649 | GO:0044237 | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 20 | 67 | - | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
Vifa1g05330 | 629 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 301 | 622 | IPR037171 | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 255 | 291 | - | - | |
Vifa1g05330 | 629 | MobiDBLite | consensus disorder prediction | 187 | 208 | - | - | |
Vifa1g05330 | 629 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 50 | 505 | - | - | |
Vifa1g05330 | 629 | Gene3D | - | 439 | 502 | IPR042529 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g05330 | Vifa-Chr1 | 828522261 | 828526813 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g05330 | 5 | 629 | Eukaryotic Initiation Factors Gene Family | AT5G38640 | 60.241 | 0.0 | 704 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g05330 | K03680 | - | gmx:100775998 | 896.73 |