Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05330 ATGGATCCTCCACGCCGAGCACCCCGCACCATAATCGACCCCGTCCCTAAATTCCGTCAAGTCGGTTTCTTCGCTCCCGGAGCCCCACCCGACCGTTCTCTCTCGGGTCCACCCGACCCGTCTCACTCTTCTCACCCTATCGCCGACACCTCCGCTTCTCTTTCACCTGTTATGATCCCTCCGCCGCGTCATCTTTCTGATAACCTAACGATGCACGCTCGGTCCGCCGCGTTGCCTCGCCGTGCTGAGTCGATTACTGTTGGTGGGAGTAACTCTGATGCTCCGGTTTCGCCGGCGCCGTCGTCGTCGTATTCGAGTAGGGTTGTTGTTGGTGGTGACAGAGGGTTTTTTGATGGGAAGGGGAGTGATGCTGGGAAGGTTGTGGCGTCTTCGTTTCCGAGAGGGGGGTTTGATTTGACGGCGTTGAAGGGGAATGGTGGTGGTGTTGTTCCAGCGAGTGGGTTGACTACTGTTTCTGTTGTGAATGATTCGCTTGGGATTCCTGAAAAAGAAAAAGCAAACAAAGGAGGAGGGTCAGCTGGGGAAATGAAAGACCAATCTACTAATTCAAAACAGGAGAAACCTAAACTCACAAAAGCAGAAAGACGTGCAATTCAAGAAGCTCAACGAGCTGCAAAGGCTGCTGCAAAAGGTGAAGGAAATAAGGCGTCTGCAACTGCTACATCAGCGAATGCAAAACCCGCTAAAGCAGTAAAGCCTGCACAGAAAGCTGATAATGCATCAGTTGCAGCCACTGAGAAGAAGGGGAGTGATTTTCCCCATGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCTTGCAGTATGATGACAAGAGCCGGGTGGAGAAAGCTAAACGTCGTTCTGTAGTGAAACACACTGAGGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAATATGAACATGGGAGTCAGCTTCCAGATCTTGAGGCAAAGTTTTTCGATCTTGAGGCGTTGCATCCTGCTGTTTATAAGGTGGGTTTGCAGTACATATCTGGAGATATATCTGGTGGCAATGATCGTTGTATTGCAATGCTCCAAGCATTTCAAGAGGCCATCAAAGATTACAAGGTTCCACCTGAGAAGAGTCTCGGGAGAGATTTGACAGCAAAAATTGGTAGTTATGTATCGTTTCTTAATGAGTGCCGACCTTTGTCAATCAGTATGGGAAATGCAATTAGATTTCTCAAGAGTCAGATAGCCAAGCTACCTTTAACCTTGTCTGAGTCAGAAGCAAAAACTTCTCTCCAGTCAGATATTGAGCGTTTTATAAGTGAGAAGATCATACTTGCCAACAAGGTGATAGTCAAGCACGCCGTCACCAAAATAAGAGATGGGGATGTTCTTCTGACATACGGGTCATCATTGGCAGTTGAAATGATTCTTTTACATGCACACGAATTAGGAAAACAATTTCGTGTTGTGATAGTCGACTCTCGTCCAAAGCTTAGAGGCCAACAGTTACTCCGCAGGCTTGTGGAGAAAGGTGCTGAATCAATACTCTCTAACGGAACGGTATATTCAAGAGTGGGGACTGCAAGTGTTGCAATGGTTGCTCATGCATCTCGGGTACCAGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAAAGGGTACAGCTGGATTCAATTTGCTCGAATGAACTTGGTGATCCAGATGCCATTTCAAATGTTCAGGGTAGAGTGGATGTCAACCACTTGGATGGTTGGTCCGATATTGAAAATCTGCAACTTCTAAATCTGATTTATGATGCAATGCCTTCAGATTATGTTTCAATGATAGTCACTGATTATGGCATGGTCCCCCCCACAAGTGTACCTGTAATTGTAAGAGAATATGGGAGAGAACAGGTCTGGATATAA 1890 0.4656 MDPPRRAPRTIIDPVPKFRQVGFFAPGAPPDRSLSGPPDPSHSSHPIADTSASLSPVMIPPPRHLSDNLTMHARSAALPRRAESITVGGSNSDAPVSPAPSSSYSSRVVVGGDRGFFDGKGSDAGKVVASSFPRGGFDLTALKGNGGGVVPASGLTTVSVVNDSLGIPEKEKANKGGGSAGEMKDQSTNSKQEKPKLTKAERRAIQEAQRAAKAAAKGEGNKASATATSANAKPAKAVKPAQKADNASVAATEKKGSDFPHEKDRKKDAPQPRLQYDDKSRVEKAKRRSVVKHTEARNRVELFRHLPQYEHGSQLPDLEAKFFDLEALHPAVYKVGLQYISGDISGGNDRCIAMLQAFQEAIKDYKVPPEKSLGRDLTAKIGSYVSFLNECRPLSISMGNAIRFLKSQIAKLPLTLSESEAKTSLQSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSLAVEMILLHAHELGKQFRVVIVDSRPKLRGQQLLRRLVEKGAESILSNGTVYSRVGTASVAMVAHASRVPVIVCCEAYKFHERVQLDSICSNELGDPDAISNVQGRVDVNHLDGWSDIENLQLLNLIYDAMPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05330 629 Gene3D - 344 438 IPR027363 -
Vifa1g05330 629 Gene3D - 503 622 IPR042529 -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 37 51 - -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 166 291 - -
Vifa1g05330 629 Pfam Initiation factor 2 subunit family 344 505 IPR000649 GO:0044237
Vifa1g05330 629 MobiDBLite consensus disorder prediction 20 67 - -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 79 105 - -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 85 105 - -
Vifa1g05330 629 SUPERFAMILY NagB/RpiA/CoA transferase-like 301 622 IPR037171 -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 255 291 - -
Vifa1g05330 629 MobiDBLite consensus disorder prediction 187 208 - -
Vifa1g05330 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 50 505 - -
Vifa1g05330 629 Gene3D - 439 502 IPR042529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05330 Vifa-Chr1 828522261 828526813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05330 5 629 Eukaryotic Initiation Factors Gene Family AT5G38640 60.241 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05330 K03680 - gmx:100775998 896.73