Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05321 ATGGATTACAACAGTTGGGTTCCTGTGGCAGACGAAAGAAAGGCTTATGGCACATTAACAAATCATTCATCAGTTTTCTCCGACAATATACGAAAGACAGGTTTCGATGAATTATACAATAAACCTGTTGGATTCTTCACAGATTTTTCTGCTTCAATGGAGGACTATATGAACCTGGAGACATTGCCTGGCCGTGTGCAAGCTGTATCAGACTATTATAGCATGCCAAAAGGGGGACAATCTGGCCCTTCTACTGTTCATGATCTGCCTTGTTTTCCTGATGACCCTTCATCAATTCCCCCAGTTGCTAATATGGATGTGTGTGGTAACTTACCTGTTTATGGTGGTGGAAGCTATTTGGATGCTAACACCCGATTTATTAACAACTATTTTCCTCATCATCACACAAATAATTGTGATACCGACATACTACAACCTACCAAAAGAAAAAAAATGATTTATGGATTTTCCAATCCTTTTCCTGGCTGGAACTCTTGTTTAGAATTGCAAGATGCATGGAAATGTCAACCACAAATGCTGGATTTTCAGAAGAGTTCTACTGTAAGACATGATGTTAATGATATCTTGTCTGGTAATACCGAACCCATTCCAGTACTACCTACCAAAAGACACAAAATGCCAGATTCATATTTTGGTGTATCTTTGAATAACGATCAATGGAATAACCAGTTGGTTCAACCTTATTCCTCTCAAACACCTTCAGAAGTGCAGCAACAGTCACAATTTCCCCCCTTCTCTTCTTTCAATTTTAAGAGCAACGGGGAAGAACTTACAAATCCGATGTTTCATTCTACGGGAATCAGAGGGATAAACAACAATGAGGCAGGTGATACACTTGAACAGGTCTTAGAGGAGCCAAGCCTGGAAAGCCATGATGTGATGGAAATCAGCTTAGAGGAATTTGTCGGTAGTTTGATGTCTAGGAAGCATACTCTCGACATGGATCGTTTTGCTACTGGTGGAGAGGTTATGCAGGGCATAGCTGAATTCGACCGTGGAATTACATTGAACTCCAACCTTCCTACTCTCACCGAGGATGTTTTTCTTATTGATGGAGAAGATATACAAGACACAACTGAGTTCAGGACAAACACCAAAAAGAAAGTTGATGAGCCAACAAATACTAAGTCCTCAAATACTATGGTTAATGAGATGAGTAGGGACAAATCAATGGAAATTGACATTGGATCGAATTCCATTATGCATTCTCTCATAAGCAAGGTTCCTATTCTTATTGATGTAGAGGACAAACATGACATAATTGGATTTAACCAAGAGGAGAAAGTTGTTAAAAGGAAAGTTAGTGGGCCAAAAGTTGATCAAGAGAAACAATTAAAATCCCCAAATACAACCATTGATGTTATTTCCTTGATTGATTTTTTCACACATGATCAAATAACAGAGCATATTAATAGTCTGAGAAAGGAACCTCTTCGGATTACAACTGAAGATGGAATAGGAATTGATGCAAACACATGCCAATTATGTGAAAGGGAAAAGCTTTACTTTGCACCGGTACCGATTTTTTGTATATGCTGTGGCGTCTCCATCGGGAGAAGAAAAATATATTTCGGTAGAAAAGATGAGGAATTTGATGCAGAGCGTTGCTTTTGCTCCTCCTGTTATAATGCATCTAAAGGCGGGTGCATTGCATTCAACGGGACATCTGTTTCTAAGGCAAATCTTGAAAAAAAGACAAAGGATGAAGTACTTGAAGAACCGTGGGTCGAATGCAATAAATGCAAAAGATGGCAGCATCAAGTATGTGCACTCTACAACAGCGAAAAAGATTTGGACTGCAGTGTTGAGTATATATGTGCTGTATGCCGCTTAAGAGAAATTGAAAATGGAGTGCATGTTCCCTTACAAAAGGCTATTGTTTATGGTGCTAAGGACTTACCAAGTACCATGCTTAGTGACCACTTAGAGAAGAGACTTTTTAAGCGTCTCATGGAAGTGAGAGTAGATGGGGAAAAAGTTAAAGGAAGTGAGAATCTTGATAAGGTTTTAGCAGCAGAAAGTATTTCTATTAGAGAAGTGTTATCTGTTGACAAACAATTGAAAGTGAAGAAGCAGTTTCTTGACATCATCCCAGAAAAGAATTACCCGGCTGAATTCTCTTATAGATCAAGAGTTATACTTCTGTTTCAGAAGATTGATGGAGCAGATATATGCATTTTTGGACTGTACGTCCAGGAGTTTGGCTCTGAATGTGGCAATCCGAATCAGCGTTGTGTGTACATTTCATATCTTGATTCTGTCAAATATTTTAGCCCTGAAAGAGTGATTGTGGAAGGAGGAGCACTTCGTACCTTCGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAAAGGGGTTTCTCAACATGCTACATATGGGCATGTCCTCCTTCAAAAAGGGATGATTATATACTATATTGTCATCCCAAAGAGCAAAAGACTCCAAACAAGGCTAAGCTACGATCTTGGTACCTTTCAATGCTAAAAAAGGCTACTGAAGAAAAAATTGTTGTTGGTTTAACCAACATATATGATCATTTCTTTGTTCCTACTGAAAAAGAGGGCTCCAAAGTGACGATTTCTCGTTTGCCATACTTTGATGGAGACTTTTGGTGTGGTTCTGCAATGGAAAAAGCAAGGACAATTGAAAAAGAGAGTAGAGGAGACTATGAAAATATGTTAAAGAAACAAGTGTCAACTAGAGCTTTAAAGAGCATGGGACATGTCAATCCTTCGATAGACGCTGCTAAAGACATTCTGGTGATGCAAAAATTGGGTGAAGATATATTTCCTTCCAAGGAAAATTTCATTGTAGCTCACTTACAGTATTCATGCATGCACTGCTGTGAAGTGATAATGTCTGGGAAGCGGTGGTTTTGCACTGAATGCAAGAAATTTCAAGAGTGTGAAAGATGTCATAGTTCAAATGAACACACCTTAAAGAACGGTGAAGTGCATCCACTTTGTGAGGCCGTTGTTGATGATATCCCCTCCAACACTAAGCATAATGATACCATCCTTGAGAATGGATTATTTGAAGATAGGAACAACTTTTTGAGCTTCTGCCAGAAGTATCAGTTTCAATTTGACACACTCCGACGTGCTAAGTATTCCTCAATGATGATCCTCTACCATCTAAGCAATCCTAGTCCTATGAATTTTGGAAAACGTTGTAGTATTTGTTGCGCACACAATGTGTTCCAAAAGTGCTGGAAATGTGAGGTTTGTCCAGATTGTACCATTTGCTCTGCATGCTATAAGGATAGAGGTGCTGACTGCCATGAACACAAGTTGACTCAAAGTGAACACAAATTGGCTGAAAATAATTCAACATCACAATCTGATAATCAAGAGTCTAATGGGAAAATGATGCTGAAGATGCTGAAACTGGAGAAATTTTTGAAGAATGTATCTCAACTTCGGAATCATGAGTCACAAAGGGAAAAGTTGCTGAAGCTGGAGATGAAGCTGAAGCATGCATATCAATGTCCCGCAACTAGTCCTAAACCTTGCTCTGATACATCATGTTGTCAATTCAAGAAGTTTTTAAAACATGCCAAAAGTTGCACAGCTCATCTTCGTGGCGGATGCGAGTATTGTGAAAAGATATGGACTATACGATTTTCTCATTCCTTGGATTGCCAAGACTCAGAATGTATAATACAACATTGCAGCATGCTGAAGAAGCGTTTAGAATATAGAGGATTGCGTTCGAAATCTTGA 3753 0.3882 MDYNSWVPVADERKAYGTLTNHSSVFSDNIRKTGFDELYNKPVGFFTDFSASMEDYMNLETLPGRVQAVSDYYSMPKGGQSGPSTVHDLPCFPDDPSSIPPVANMDVCGNLPVYGGGSYLDANTRFINNYFPHHHTNNCDTDILQPTKRKKMIYGFSNPFPGWNSCLELQDAWKCQPQMLDFQKSSTVRHDVNDILSGNTEPIPVLPTKRHKMPDSYFGVSLNNDQWNNQLVQPYSSQTPSEVQQQSQFPPFSSFNFKSNGEELTNPMFHSTGIRGINNNEAGDTLEQVLEEPSLESHDVMEISLEEFVGSLMSRKHTLDMDRFATGGEVMQGIAEFDRGITLNSNLPTLTEDVFLIDGEDIQDTTEFRTNTKKKVDEPTNTKSSNTMVNEMSRDKSMEIDIGSNSIMHSLISKVPILIDVEDKHDIIGFNQEEKVVKRKVSGPKVDQEKQLKSPNTTIDVISLIDFFTHDQITEHINSLRKEPLRITTEDGIGIDANTCQLCEREKLYFAPVPIFCICCGVSIGRRKIYFGRKDEEFDAERCFCSSCYNASKGGCIAFNGTSVSKANLEKKTKDEVLEEPWVECNKCKRWQHQVCALYNSEKDLDCSVEYICAVCRLREIENGVHVPLQKAIVYGAKDLPSTMLSDHLEKRLFKRLMEVRVDGEKVKGSENLDKVLAAESISIREVLSVDKQLKVKKQFLDIIPEKNYPAEFSYRSRVILLFQKIDGADICIFGLYVQEFGSECGNPNQRCVYISYLDSVKYFSPERVIVEGGALRTFVYHEILIGYLDFCKKRGFSTCYIWACPPSKRDDYILYCHPKEQKTPNKAKLRSWYLSMLKKATEEKIVVGLTNIYDHFFVPTEKEGSKVTISRLPYFDGDFWCGSAMEKARTIEKESRGDYENMLKKQVSTRALKSMGHVNPSIDAAKDILVMQKLGEDIFPSKENFIVAHLQYSCMHCCEVIMSGKRWFCTECKKFQECERCHSSNEHTLKNGEVHPLCEAVVDDIPSNTKHNDTILENGLFEDRNNFLSFCQKYQFQFDTLRRAKYSSMMILYHLSNPSPMNFGKRCSICCAHNVFQKCWKCEVCPDCTICSACYKDRGADCHEHKLTQSEHKLAENNSTSQSDNQESNGKMMLKMLKLEKFLKNVSQLRNHESQREKLLKLEMKLKHAYQCPATSPKPCSDTSCCQFKKFLKHAKSCTAHLRGGCEYCEKIWTIRFSHSLDCQDSECIIQHCSMLKKRLEYRGLRSKS 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05321 1250 SUPERFAMILY TAZ domain 1152 1238 IPR035898 -
Vifa1g05321 1250 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 634 1061 IPR031162 GO:0004402
Vifa1g05321 1250 Pfam Histone acetylation protein 673 882 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05321 1250 ProSiteProfiles Zinc finger ZZ-type profile. 950 1003 IPR000433 GO:0008270
Vifa1g05321 1250 SUPERFAMILY FYVE/PHD zinc finger 579 619 IPR011011 -
Vifa1g05321 1250 ProSiteProfiles Zinc finger PHD-type profile. 542 619 IPR019787 -
Vifa1g05321 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 620 IPR013083 -
Vifa1g05321 1250 ProSiteProfiles Zinc finger TAZ-type profile. 1153 1237 IPR000197 -
Vifa1g05321 1250 PANTHER CBP/P300-RELATED 372 1242 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05321 1250 Gene3D - 947 996 IPR043145 -
Vifa1g05321 1250 SUPERFAMILY RING/U-box 930 990 - -
Vifa1g05321 1250 SMART TAZ_2 1154 1235 IPR000197 -
Vifa1g05321 1250 Pfam TAZ zinc finger 1166 1234 IPR000197 -
Vifa1g05321 1250 Gene3D TAZ domain 1150 1250 IPR035898 -
Vifa1g05321 1250 SMART KAT11_2 668 962 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g05321 1250 SUPERFAMILY RING/U-box 1044 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05321 Vifa-Chr1 827434449 827441023 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa1g05321 HAT_KAT11 2.4e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05321 K04498 - psat:127094503 1362.82