Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05313 ATGGCTTCCGAAGGTGAAAATTCCGAACTTTCGTATATCTTCGAAAGAATGATCAGAAACAGAGACATGTCTCTCTTGTTACCCTTCATCCAAGGTCTTTCTTCCGCCGCTTCAACTCGAAGAAACACCGACCGCAACCTAGATCAAGAATCGTCGAGTAACGAAGATTCCGAAGATTCCGAAGATTCCAACCGTCAAAGAATCATCTTGGTGAACCCTTCCACACAGCGAATGATTATAGTGGAAGGAGTATCAAGTCTCGAAACCCTGTTTCAGGAACTCGAAAATACTACAAAGAAGGGTCAGCCACCAGCTTCAAAGGAGTCGATAGAAGCTATGAAAAGGGTTGAAATTGAAGAAAGCGATCACGGAGAGTGTGTTGTTTGTTTGGAAGAGTTTGAGGTTGGTGGAGTTGTTAAAGAAATGCCTTGTAAGCATAGGTTTCATGGTAACTGTATTGAGAAGTGGTTAGGGATTCATGGGTCTTGTCCTGTTTGTAGGCATCAGATGCCTGCTGATGAGAAAGATGAGGGAAAGAAAATTGACGAAGAGGAAGAAGCAGAAGAAGGTGGAGAGAGAAGGAGGGTTGGTGGTGAAGTTTGGGTCAGTTTTTCTATTAGTAGGAGGGATAGGGGAAATCATGATCAAAATCAAGTCACTTCTGGTGGTGATTCAAATGATTCTTCATCAAGCCCTACAGATGGTGACGAGACTGGGAATTGA 723 0.4329 MASEGENSELSYIFERMIRNRDMSLLLPFIQGLSSAASTRRNTDRNLDQESSSNEDSEDSEDSNRQRIILVNPSTQRMIIVEGVSSLETLFQELENTTKKGQPPASKESIEAMKRVEIEESDHGECVVCLEEFEVGGVVKEMPCKHRFHGNCIEKWLGIHGSCPVCRHQMPADEKDEGKKIDEEEEAEEGGERRRVGGEVWVSFSISRRDRGNHDQNQVTSGGDSNDSSSSPTDGDETGN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05313 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 173 IPR013083 -
Vifa1g05313 240 Pfam Ring finger domain 125 167 IPR001841 -
Vifa1g05313 240 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Vifa1g05313 240 FunFam E3 ubiquitin-protein ligase RNF181 93 173 - -
Vifa1g05313 240 MobiDBLite consensus disorder prediction 37 66 - -
Vifa1g05313 240 MobiDBLite consensus disorder prediction 170 240 - -
Vifa1g05313 240 MobiDBLite consensus disorder prediction 216 240 - -
Vifa1g05313 240 SMART ring_2 126 166 IPR001841 -
Vifa1g05313 240 MobiDBLite consensus disorder prediction 43 65 - -
Vifa1g05313 240 SUPERFAMILY RING/U-box 109 172 - -
Vifa1g05313 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 37 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05313 Vifa-Chr1 826587698 826588420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05313 1 223 C3H Transcription Factor Family AT1G26800 47.368 2.88e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05313 - - pcin:129321278 228.024