Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05308 ATGGCATCTGAAACTGAAGTACCCCAACATTATTCTCTGTACAACATGATAAGAAGAGTTAGAGACATGGCATATGAACTTTCCTATTTGTTTGAAAGAATGATAAGAACAAGAGACATGTTGTCTCTGTTCTTTCCCTTCATGTCTCGTCTTTTTGATTTGTCAATTCGAAGAAACACAGACGACGACCCAGATCAAGAATTGTCAAGTAACGTTGATTCCAACCGTCAAATAATCATCTTGGTGAACCCTTCTACACGGCGCGTGGTTTTAATCGAAGGAGTTTCAAATCTTGAAGCTTTGTTTCATGAGCTTGGAAGTACTACAAATAATGGTCAACCACCAGCTTCAACAAAGTCAATAGAAACGATGAAAAGGGTTGAAGTTTTTGAAGGTGAAGATCGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGGTTGATGGAGTTGTTAAAGAAATGCCTTGTAAGCATAGGTTTCATGGTAACTGTATTGAGAAGTGGTTAAGGATTCATGGATCTTGTCCTGTTTGTAGGTATCATATGCCTATTTGA 552 0.3786 MASETEVPQHYSLYNMIRRVRDMAYELSYLFERMIRTRDMLSLFFPFMSRLFDLSIRRNTDDDPDQELSSNVDSNRQIIILVNPSTRRVVLIEGVSNLEALFHELGSTTNNGQPPASTKSIETMKRVEVFEGEDRECVVCLEQFEVDGVVKEMPCKHRFHGNCIEKWLRIHGSCPVCRYHMPI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05308 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 183 IPR013083 -
Vifa1g05308 183 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Vifa1g05308 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 63 182 - -
Vifa1g05308 183 Pfam Ring finger domain 136 178 IPR001841 -
Vifa1g05308 183 SMART ring_2 137 177 IPR001841 -
Vifa1g05308 183 FunFam E3 ubiquitin-protein ligase RNF181 105 183 - -
Vifa1g05308 183 SUPERFAMILY RING/U-box 119 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05308 Vifa-Chr1 826182917 826183468 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05308 22 183 C3H Transcription Factor Family AT1G26800 46.914 8.00e-46 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05308 - - psat:127121423 242.276