Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g05308 | ATGGCATCTGAAACTGAAGTACCCCAACATTATTCTCTGTACAACATGATAAGAAGAGTTAGAGACATGGCATATGAACTTTCCTATTTGTTTGAAAGAATGATAAGAACAAGAGACATGTTGTCTCTGTTCTTTCCCTTCATGTCTCGTCTTTTTGATTTGTCAATTCGAAGAAACACAGACGACGACCCAGATCAAGAATTGTCAAGTAACGTTGATTCCAACCGTCAAATAATCATCTTGGTGAACCCTTCTACACGGCGCGTGGTTTTAATCGAAGGAGTTTCAAATCTTGAAGCTTTGTTTCATGAGCTTGGAAGTACTACAAATAATGGTCAACCACCAGCTTCAACAAAGTCAATAGAAACGATGAAAAGGGTTGAAGTTTTTGAAGGTGAAGATCGAGAGTGTGTTGTTTGTTTGGAACAATTTGAGGTTGATGGAGTTGTTAAAGAAATGCCTTGTAAGCATAGGTTTCATGGTAACTGTATTGAGAAGTGGTTAAGGATTCATGGATCTTGTCCTGTTTGTAGGTATCATATGCCTATTTGA | 552 | 0.3786 | MASETEVPQHYSLYNMIRRVRDMAYELSYLFERMIRTRDMLSLFFPFMSRLFDLSIRRNTDDDPDQELSSNVDSNRQIIILVNPSTRRVVLIEGVSNLEALFHELGSTTNNGQPPASTKSIETMKRVEVFEGEDRECVVCLEQFEVDGVVKEMPCKHRFHGNCIEKWLRIHGSCPVCRYHMPI | 183 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g05308 | 183 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 183 | IPR013083 | - | |
Vifa1g05308 | 183 | ProSiteProfiles | Zinc finger RING-type profile. | 137 | 178 | IPR001841 | - | |
Vifa1g05308 | 183 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 63 | 182 | - | - | |
Vifa1g05308 | 183 | Pfam | Ring finger domain | 136 | 178 | IPR001841 | - | |
Vifa1g05308 | 183 | SMART | ring_2 | 137 | 177 | IPR001841 | - | |
Vifa1g05308 | 183 | FunFam | E3 ubiquitin-protein ligase RNF181 | 105 | 183 | - | - | |
Vifa1g05308 | 183 | SUPERFAMILY | RING/U-box | 119 | 181 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g05308 | Vifa-Chr1 | 826182917 | 826183468 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g05308 | 22 | 183 | C3H Transcription Factor Family | AT1G26800 | 46.914 | 8.00e-46 | 148 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g05308 | - | - | psat:127121423 | 242.276 |