Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05304 ATGGCTTTCGAAGGTCTTTCTCCTGTCTCTTCAACTCGAAGAAACATCAATCACAACCCAGATCAAGAATCATTGAGTAACGAAGATTTCAAATATTCCAACCATCAAAGAATCATCTTGGAACTCGAAAATACTACAAAGAAGGGTCAGCCACCAGCTTCAAAGGAGTCGATAAAAGCTATGAAAAGGGTTGAAATTGAAGAAAGCGATCACAGAGAGTGTGTTGTTTGTTTGGAAGAGTTTGAGGTTGGTGGGGTTATTAGAGAAATTCCATGTGAGCATAGGTTTTATTGTGATTGTATTGAGAAGTGGTTAGGGATTCATGGGTCTTGTCCTGTTTGTAGGTATCAGATGCCTGCTGATGAGAAAGATGAGGGAAAGAAAATTGACGAATAG 396 0.3939 MAFEGLSPVSSTRRNINHNPDQESLSNEDFKYSNHQRIILELENTTKKGQPPASKESIKAMKRVEIEESDHRECVVCLEEFEVGGVIREIPCEHRFYCDCIEKWLGIHGSCPVCRYQMPADEKDEGKKIDE 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05304 131 Pfam Ring finger domain 73 115 IPR001841 -
Vifa1g05304 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 121 IPR013083 -
Vifa1g05304 131 ProSiteProfiles Zinc finger RING-type profile. 74 115 IPR001841 -
Vifa1g05304 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 19 119 - -
Vifa1g05304 131 CDD RING-H2_PA-TM-RING 73 115 - -
Vifa1g05304 131 SMART ring_2 74 114 IPR001841 -
Vifa1g05304 131 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g05304 131 SUPERFAMILY RING/U-box 57 120 - -
Vifa1g05304 131 FunFam E3 ubiquitin-protein ligase RNF181 41 121 - -
Vifa1g05304 131 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05304 Vifa-Chr1 826148852 826149393 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05304 33 128 C3H Transcription Factor Family AT1G26800 52.083 6.39e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05304 - - psat:127121423 137.117