Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05302 ATGAATGACTTGATTTCAAATTCTTTCAAAAAATACACTGATTTCAAGGAAGATGCGTACCTTGAGGAGGATGTGGAGGCAGGGAATAGAGAAACTGTGAATCTTGACAAGTTTTTTGAAGATGTTGAGAATATAAAAGCAGACATGAAAATAATTGAAATATATTATAGGAAATTGCAAGAGGCTAATGAAGAAAGTAAAACGGTTCATAATGCGAAAACAATGAAAGATCTTCGCGCCCGAATGGACAAAGATGTAGAACAGGTCCTCAAATGTGTCAAAGTAATTAAAGGAAAACTCGAAGCATTGGATCGTTCGAATGTGGCGAATAGAAAAATTGCAGGGTGTGGTCCTGGTTCATCGGCAGATAGGACTAGAACTTCAGTGGTTAGTGGATTAGGGAAGAAACTCAAAGATATGATGGATGATTTTCAAGGTTTGAGATCTAGAATGCAAATGGAGTATAAGGAAACAGTTGAAAGAAGGTATTTTACAATAACAGGAGAGAGGGCAGATGATGAAACTATAGATAATTTGATAGCAAGTGGAGAGAGTGAAAATTTTATGCAAAGGGCAATTCAAGAACAAGGTAGAGGCCAAATAATGGACACAATAATAGAAATTCAAGAAAGACATGATGCTGTTAAAGAAATAGAGAAGAATCTGATTGAGTTGCATCAAGTATTTTTGGATATGGCTGCTTTGGTAGAGTCTCAAGGGCAACAACTTAATAACATTGAGAGTCATGTTGCACATGCTAGTTCTTTTGTGAGAAGAGGGACAGAACAACTTCAAGAAGCTAAAGTGCAACAAAAGAGTTCTAGGAAGTTCACAATGTATGCAATAATTCTTAGTATTATTTTAGTTCTTGTGATTCTATTTCCTCTTTTCTCAACACTTTTTCCTCATTTGTTTAGATGA 921 0.355 MNDLISNSFKKYTDFKEDAYLEEDVEAGNRETVNLDKFFEDVENIKADMKIIEIYYRKLQEANEESKTVHNAKTMKDLRARMDKDVEQVLKCVKVIKGKLEALDRSNVANRKIAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRSRMQMEYKETVERRYFTITGERADDETIDNLIASGESENFMQRAIQEQGRGQIMDTIIEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAKVQQKSSRKFTMYAIILSIILVLVILFPLFSTLFPHLFR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05302 306 CDD SynN 35 192 IPR006011 GO:0016020
Vifa1g05302 306 SMART SynN_4 30 156 IPR006011 GO:0016020
Vifa1g05302 306 Gene3D - 191 297 - -
Vifa1g05302 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Vifa1g05302 306 PANTHER SYNTAXIN 60 289 IPR045242 -
Vifa1g05302 306 FunFam Syntaxin 132 198 298 - -
Vifa1g05302 306 Pfam SNARE domain 242 293 IPR000727 -
Vifa1g05302 306 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
Vifa1g05302 306 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa1g05302 306 SMART tSNARE_6 200 267 IPR000727 -
Vifa1g05302 306 Pfam Syntaxin 37 240 IPR006011 GO:0016020
Vifa1g05302 306 CDD SNARE_syntaxin1-like 204 266 - -
Vifa1g05302 306 Gene3D - 35 162 - -
Vifa1g05302 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 32 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05302 Vifa-Chr1 826069813 826070733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05302 1 305 SNARE and Associated Proteins AT1G61290 71.803 4.96e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05302 K08486 - gmx:100805869 480.715