LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05299	ATGCATGGGAGGTACGTTGATATGGGGAGGGAGAAGCGGAGTCTGGAATCGAGTTCGGTTGATGAAGGACAGCCTGATCGGAAACGACCTGCTTTGGCTAGTGTGATTGTTGAAGCACTGAAGGTGGATAGTATGCAGAAACTGTGTTCATCATTGGAGCCTATTCTACGCAGAGTTGTTAGTGAAGAAGTGGAGCGTGCTTTGGCAAAATTAGGTCCTACCAAGTTTAGTGGGAGGTCTTCTCCGAAGCGCATAGAAGCCCCTGATGGAAAATATTTACAAATGCACTTTAAGACCAGACTATCGCTTCCCCTTTTTACTGGGGGGAAAGTGGAAGGTGAGCAAGGGACAGTCATACACGTTGTTTTGGTTGATGCAAACACAGGCCATGTTGTCACGTCAGGCCCAGAGTCATGTGCCAAACTAGATGTATTTGTTCTTGAGGGGGATTTCAATAACGAGGATGATGATAATTGGGGCGAAGAAGAGTTTGAGAGTCATATTGTGAAAGAGCGGGAAGGAAAAAGGCCCCTTTTGTCTGGTGATCTGCAAGTCATATTAAAGGACGGTGTAGGAACACTGGGTGAGATGTCATTTACTGACAACTCTAGTTGGATAAGGAGTAGGAAGTTCAGATTGGGGCTGAAAGTTGCCTCAGGTTGTTGTGAAGGAATGCGTATTCGTGAAGCCAAATCAGAAGCTTTCACAGTTAAGGATCATCGTGGAGAATTATACAAGAAACACTACCCGCCTGCCTTGCATGATGAGGTTTGGAGGCTGGAGAAGATTGGTAAGGATGGTTCCTTTCATAAAAGGCTAAATAAAGCAGGAATATATAATGTTGAAGACTTCCTAAGACTTGTGATCAGAGACCCTCAGCGATTGCGGAATATTCTTGGAAGCGGCATGTCAAATAAGATGTGGGATATCCTTGTTGAGCATGCAAAAACTTGTGTTCTCAGTGGAAAACTTTATGTATATTATCCCGAGGATGCAAGAAACGTGGGTGTTGTTTTCAATCACATTTATGAATTGAGCGGCTTAATTACCAATGACCAGTATTACTCAGCCGATTCTCTCTCTGAGAATCAAAAGGTTTATGTTGACACACTGGTGAAGAAAGCATATGATAATTGGATGCACGTAATCGAGTATGATGAGAAGTCACTACTAAATTACAATCAGGATAAAAGTTTGGATACTGCTCACCCTGAGGCTCTTATGGGTTCCCATGAGTATTCAAACGCAATTCAACAGTTTTCCATCCCTAGTTTGCCACACCCAGTACATACAGGTCAACCTTCAATGGATACAAGAGTAACAGTTGGAGGTTATCATGATGGCACAACTACTAGATTCTCCATGCAATCACAGGATGCTAATCTTAATTCTTCTATTAAATTTGATGATCATGCATTTTCACTACAAAACCAGTTAATGAGTGTTCCCCAGCAAGCTCAACTTCAAAAAAATGAAAATGGGCCAACTCTTGGTCTGGCAGAAACTGCCACTCATGGCTTCCAGACTGCCAGCATCTCGAATTCTACTTACCAAGGAGTTGAAGACTTCTTCCCAGAAGAAGAAATACGTATTAGAAGTAATGAGATGCTAGAAAATGAAGATATGCAGCATGTTCTTCGCATGTTTAACATGGGAAGCCATGCAAGTTCTTCCTTCAATGCCCACGAAGATGGGTACCAAAATACATCTGCATACATGCCTGCAAACCACTTGAGCTACAATGCCGATAATGAGCCAAACAGTTCCTCAGGCAAAGCTGTTGTGGGTTGGCTTAAGCTTAAGGCAGCTTTGAGATGGGGTATTTTTGTTCGGAAGAAGGCTGCTGACAGACGGGCTCAACTCATTGAATTAGATGACTCTTAA	1884	0.4283	MHGRYVDMGREKRSLESSSVDEGQPDRKRPALASVIVEALKVDSMQKLCSSLEPILRRVVSEEVERALAKLGPTKFSGRSSPKRIEAPDGKYLQMHFKTRLSLPLFTGGKVEGEQGTVIHVVLVDANTGHVVTSGPESCAKLDVFVLEGDFNNEDDDNWGEEEFESHIVKEREGKRPLLSGDLQVILKDGVGTLGEMSFTDNSSWIRSRKFRLGLKVASGCCEGMRIREAKSEAFTVKDHRGELYKKHYPPALHDEVWRLEKIGKDGSFHKRLNKAGIYNVEDFLRLVIRDPQRLRNILGSGMSNKMWDILVEHAKTCVLSGKLYVYYPEDARNVGVVFNHIYELSGLITNDQYYSADSLSENQKVYVDTLVKKAYDNWMHVIEYDEKSLLNYNQDKSLDTAHPEALMGSHEYSNAIQQFSIPSLPHPVHTGQPSMDTRVTVGGYHDGTTTRFSMQSQDANLNSSIKFDDHAFSLQNQLMSVPQQAQLQKNENGPTLGLAETATHGFQTASISNSTYQGVEDFFPEEEIRIRSNEMLENEDMQHVLRMFNMGSHASSSFNAHEDGYQNTSAYMPANHLSYNADNEPNSSSGKAVVGWLKLKAALRWGIFVRKKAADRRAQLIELDDS	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05299	627	Pfam	Calmodulin binding protein-like N-terminal domain	93	240	IPR046831	-
	Vifa1g05299	627	Pfam	Calmodulin binding protein central domain	252	318	IPR046830	-
	Vifa1g05299	627	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vifa1g05299	627	PANTHER	OS02G0177800 PROTEIN	11	542	IPR012416	GO:0005516
	Vifa1g05299	627	Pfam	Calmodulin binding protein C-terminal domain	323	385	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05299	Vifa-Chr1	825819569	825823593	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05299	7	622	Calmodulin-binding Proteins	AT5G57580	58.733	0.0	743

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05299	-		-	gmx:100812605	1042.34