Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05290 ATGATGGAGCTAGGGTTAGAGTATTCATGTATCCAAGCAATATATAAGATTTTAGTTGTGCAGATAGAAAGTGGAACCTTTCTGCTTGAGGCTTCTCTTTTATCCATGGAGATGTTCTCCAATGTTGTGAAGAGAGGGTTAGGTCTATTGGCTACGGATAGTTTAATGTTTGAGGACAAGAGGACAAAGCCATTTGTGGAATTGTATGCGACAAATGAAAGCAAATTCTTTGAGGATTTTGGTCATGCTATGCGTAAGGTAAGTGTTTTGAATGTTAAGGTGGGGAAGAAGGGAGAGGTACGAAATAGGTGTGATTCTTTCAACAACCTTGATACTAATTGA 342 0.386 MMELGLEYSCIQAIYKILVVQIESGTFLLEASLLSMEMFSNVVKRGLGLLATDSLMFEDKRTKPFVELYATNESKFFEDFGHAMRKVSVLNVKVGKKGEVRNRCDSFNNLDTN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05290 113 ProSiteProfiles Plant heme peroxidase family profile. 43 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g05290 113 PANTHER - 39 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g05290 113 SUPERFAMILY Heme-dependent peroxidases 43 108 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g05290 113 Gene3D Peroxidase, domain 2 37 87 - -
Vifa1g05290 113 Gene3D - 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05290 Vifa-Chr1 823829602 823832180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05290 38 111 Peroxidase AT5G47000 59.459 1.39e-25 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05290 K00430 - tpra:123896134 124.02