Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05275 ATGTTGAATGTTGATGTTGTTGGTAACAAGAGAAGGAAAAGATGTGGGAGGGTTTTTAGGTTCAAGAATTTCGGGGAACAAGGTTACCCTGTTATGTTTAATGGTTCATCTTTTCGCGAAAATGTGAATGCTTTGCTTGAATATGCGAATTTGGAGAGTAATGTAAATATGGGAATGGCTATGTGGTCTTTTCAACTTGAGTTGCATCATCATCCACCTTTGCATGTTTTGTTGTTTGTGATTGAAGAATCAATTGAAGCAGCCATGAATCGTCATTGCAACCATTGTCAATATGTTGGTTGGGGCAACCATTTTATTTGCAATAAGAAGTATCATTTTCTATTACCTTCAAAGGAGGCACTAAGTAGCTGCACAAGCTGTGAAAATTGTTGTGATTCAATTGGTACAATGAACAATGGTAAGTCAAAATTAATAGAATTAGAAGGCCATATGATGCATGGTGTGTTTCACTCTAATGGATTTGGACATTTGCTATGTGTCAATGGCTTGGAAATGGGTTCTAATTTGGGTGGCAACCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGCTTGAAGGATACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAGTAGCATATAGTGAGCCATGGTTTGGTCGTTGGGGATACAAATTTGGTAGAGGATGTTTTGGTGTAACACAGTCAATGTACCAAAAAGCCATAGAAGCAATAAAAAGTATGCCACTATACTTACTCACTCACCACATTGCGAGTTCAAATCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGACCATTCTCTTATAACCCTTGGTGACTTGTTTCATTACATGTTAGAGCTCAAGTCGCGGCTTCCGCGCGAAACATGCATTAGTTCCTACAGTACAAATGCCTTAGTCGAAACAAACTGTCGTTGGTCGCCTAAAAGAATTGAAATGGCAACGAGGGTCATTGTCGAGGCCTTAAAAAGAACGGAATTCCGATGGATTTCAAGACAAGAAGTTAGGGATGCAGCGCGCGTTTACATAGGTGACACTGGTTTGTTGGATTTTGTTTTGAAGTCATTAGGTAACCATGTTGTTGGAAACTATTTAGTTCGTCGGAGCTTGAATCCGGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCTAATGCTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAGATCACAAGAGGTCAACTCATGAAAGACATGATTTGTTTGTATAAGTACATACTTATTGATACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACAAAGTATCTTATCAAAGACTATGGAGAGGTACCTTTGCAAGTTGAATTAGGATCAGAAGGAAAATTCAATCTTTATTGTACAATTTCGTTGAGGAATGTTAACAATGTAGGGCATGATCATGAGTATTATTTGAACAATGAAATGTCAATGCCAATGCCACCTTATGAATGTATCACATTGAAAAATTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGAAATTTTAGGGAAATCTATTGGGGGTTAAGGGGATTTGTGGTGGAATCAAATGAGAATTTGATGAATGCAAAAGGAAATGAAATGGTTTTTGGAATGATTGAAGTTGGTGGAAAACTTGTTCTTGAAGGTTGGCATGGTAGTGAAATGGTTGAGCAAATTTGTGAAAGGAATCCCAATAAGGGGGTTGTGGATTGCACTTGTGGAACTAAAGAAGATGATGGAGAAAGAATGGTATCTTGTGATATTTGTGAAATTTGGCAACACACTAGATGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1983 0.3727 MLNVDVVGNKRRKRCGRVFRFKNFGEQGYPVMFNGSSFRENVNALLEYANLESNVNMGMAMWSFQLELHHHPPLHVLLFVIEESIEAAMNRHCNHCQYVGWGNHFICNKKYHFLLPSKEALSSCTSCENCCDSIGTMNNGKSKLIELEGHMMHGVFHSNGFGHLLCVNGLEMGSNLGGNQIMEFWNRLCNGLQARKVSLKDTSQKRGMELRLVNGVAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIKSMPLYLLTHHIASSNHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRETCISSYSTNALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARVYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNAYPCHEGLVMSSSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYLIKDYGEVPLQVELGSEGKFNLYCTISLRNVNNVGHDHEYYLNNEMSMPMPPYECITLKNCATINDLKLEVERNFREIYWGLRGFVVESNENLMNAKGNEMVFGMIEVGGKLVLEGWHGSEMVEQICERNPNKGVVDCTCGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05275 660 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 653 - -
Vifa1g05275 660 SMART PHD_3 604 650 IPR001965 -
Vifa1g05275 660 Pfam PHD-finger 605 651 IPR019787 -
Vifa1g05275 660 CDD PHD_MMD1_like 604 649 - -
Vifa1g05275 660 ProSitePatterns Zinc finger PHD-type signature. 605 649 IPR019786 -
Vifa1g05275 660 ProSiteProfiles Zinc finger PHD-type profile. 602 652 IPR019787 -
Vifa1g05275 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 589 653 IPR013083 -
Vifa1g05275 660 SUPERFAMILY FYVE/PHD zinc finger 597 652 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05275 Vifa-Chr1 822206960 822210053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05275 7 660 PHD Transcription Factor Family AT5G22260 51.308 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g05275 PHD 6.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05275 K26271 - gmx:100780210 1113.98