Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05273 ATGAGCGATCACTTGGTACTCTTCGTTGACGAACTTGTCCGCCCAGTTCCCGTTGACCCTGTTGAGCAGCCTGCTCAGCTTCCTTCCGAACCGTCGTTGACTCCGGCTGCTTCCGATGCCGCGTCTGGATCCGGAGGATCTGAGTCGCCGGTGGATCAAGATGGAGAGGATTGTGGTGAGGAGGAACCGTTGATCCAGATGGTGGAGTGCCGTATCTGTCAGGAGGAGGATAGTGTTTCCAATTTGGAGACTCCCTGTGCTTGCAGGGGTAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACAGCCCCACCACCTCGCCCTAATCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGTTCGCCCTTGGACTTGCGTGATCCTCGCCTATTGGCAATTGCAGAGGCAGAGCGTCAATTCCTTGATGCAGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCTTTTTGTCGCTCAGCTGCCCTAATTTTGATGGCCCTTTTACTTCTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTACTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTCTGCAACGGCGGCGACAAAGACAAGAGGCAGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACAATTTGCGATAGCACCAGTTCCTACAGTACAGCAGGAACAAGTGTAG 864 0.4954 MSDHLVLFVDELVRPVPVDPVEQPAQLPSEPSLTPAASDAASGSGGSESPVDQDGEDCGEEEPLIQMVECRICQEEDSVSNLETPCACRGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLQFAIAPVPTVQQEQV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05273 287 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Vifa1g05273 287 MobiDBLite consensus disorder prediction 17 58 - -
Vifa1g05273 287 Coils Coil 158 178 - -
Vifa1g05273 287 FunFam RING/FYVE/PHD zinc finger protein 58 126 - -
Vifa1g05273 287 CDD RING_CH-C4HC3_MARCH 70 116 - -
Vifa1g05273 287 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Vifa1g05273 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 121 IPR013083 -
Vifa1g05273 287 SMART ringv_2 69 116 IPR011016 GO:0008270
Vifa1g05273 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Vifa1g05273 287 MobiDBLite consensus disorder prediction 27 49 - -
Vifa1g05273 287 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Vifa1g05273 287 SUPERFAMILY RING/U-box 68 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05273 Vifa-Chr1 821638247 821641895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05273 69 145 C3H Transcription Factor Family AT2G37950 35.955 1.00e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05273 - - gmx:100779674 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05273 1 821638247 821641895 Vifa1g05273 1 821638247 821641895 ECH