Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05271 ATGATGACAATTATGAAGATTATCGCAATGAATCTGATATACAAATATCTCCCCGACATAGTGGACATACCCCGTGAATCTCCTTCAGTCACTTGTCTATACATGTTATATGAAATTCATGATGGCAAGGAAGTAAGGAATTCGGCAACTTCAGCAGGCGAGGGAACATATCCGATAGAAGATACAGAAAGCTTCATCATCAGCCTCATGATTTTGTATGCAAATATATGGAAGTCATCTTCAAGTCTCCGATTCAAAGCTCATACAGCTTTCCTGGTGCTAACAATCACTTCTGTCTATTCATTCTTTTTTGACAAAGTGGTGAATGGGAAACCAGATGCATATAGTCTCGTTTCATGTGCTTCCTTTGCTATCATGTCACTCAGTTTGTCACGGAGAACTCATTGCGGAGTTGAAATTGATCTTCTCTACTTCTTCCTCGAATGTCTAATTGTGCAGCTCATGAAGATTAGCTTGCAGTTACTCATTCTTGGAGCAGGTTTCAGCTACTCCCTTACTATTCTTCGTTCTTCACTCTCTTCAACAGATGATGGAATAGAAAACGAGTATTTTGACCCGCAAGGTGAAAATTCACTTGTCCTTGAAATGGATTCATTACTACTGGAACAGCTTAAAACTTGTATGAAGGGAATTGAAGAGGAGAACTTGAATCTCGTAGACAGGCTTATGGAGCTCGTGAAGGAATACAATCTAGATAAGAGTGAATTACATTTACTCGGTAAGTCTGATTATGTAATGGATTCTATGTCATCAAGAAAGATCCATAATCTTAATGAAACAGTGAAGTTGATGGTAGCAGCTGGTTATAAGAAAGAGTGCTATGATGTGTATAGCAGTTGCCGCAAGGTATTCTTGAAGGTGTGTCTCAAAAGCGAAATATTTGGGTTGCCAACGGAAAACATCAATTCCATCCATGAGTATGAAAGAGAGAAATATTTAGATATTATGTTTGATAGATGGATGACTGCTTTGGATGTAGCTATGATAATCTTGTTTCCCATTGAACAGAAACTCTGCAATCGTGTCTTCTTGGGGTTTTCCTAG 1065 0.385 MMTIMKIIAMNLIYKYLPDIVDIPRESPSVTCLYMLYEIHDGKEVRNSATSAGEGTYPIEDTESFIISLMILYANIWKSSSSLRFKAHTAFLVLTITSVYSFFFDKVVNGKPDAYSLVSCASFAIMSLSLSRRTHCGVEIDLLYFFLECLIVQLMKISLQLLILGAGFSYSLTILRSSLSSTDDGIENEYFDPQGENSLVLEMDSLLLEQLKTCMKGIEEENLNLVDRLMELVKEYNLDKSELHLLGKSDYVMDSMSSRKIHNLNETVKLMVAAGYKKECYDVYSSCRKVFLKVCLKSEIFGLPTENINSIHEYEREKYLDIMFDRWMTALDVAMIILFPIEQKLCNRVFLGFS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05271 354 SUPERFAMILY Cullin repeat-like 211 352 IPR016159 -
Vifa1g05271 354 Gene3D Exocyst complex component Exo70 193 354 - -
Vifa1g05271 354 PANTHER EXOCYST COMPLEX PROTEIN EXO70 176 352 IPR004140 GO:0000145|GO:0006887
Vifa1g05271 354 Coils Coil 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05271 Vifa-Chr1 821225103 821226852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05271 250 354 EXO70 exocyst subunit family AT5G58430 41.905 6.56e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05271 - - mtr:11426486 352.443