Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05270 ATGATGACAATTATGAAGATTATCGCAATGAATCTGATATACAAATATCTCCCCGACATAGTGGACATACCCCGTGAATCTCCTTCAGTCACTTGTCTATACATGTTATATGAAATTCATGATGGCAAGGAAGTAAGGAATTCGGCAACTTCAGCAGGCGAGGGAACATATCCGATAGAAGATACAGAAAGGTGGGAAGATAAAACCACTGATTGCTGCTTCATCATCAGCCTCATGATTTTGTATGCAAATATATGGAAGTCATCTTCAAGTCTCCGATTCAAAGCTCATACAGCTTTCCTGGTGCTAACAATCACTTCTGTCTATTCATTCTTTTTTGACAAAGTGGTGAATGGGAAACCAGATGCATATAGTCTCGTTTCATGTGCTTCCTTTGCTATCATGTCACTCAGTTTGTCACGGAGAACTCATTGCGGAGTTGAAATTGATCTTCTCTACTTCTTCCTCGAATGTCTAATTGTGCAGCTCATGAAGATTAGCTTGCAGTTACTCATTCTTGGAGCAGGTTTCAGCTACTCCCTTACTATTCTTCGTTCTTCACTCTCTTCAACAGATGATGGAATAGAAAACGAGTATTTTGACCCGCAAGGTGAAAATTCACTTGTCCTTGAAATGGATTCATTACTACTGGAACAGCTTAAAACTTGTATGAAGGGAATTGAAGAGGAGAACTTGAATCTCGTAGACAGGCTTATGGAGCTCGTGAAGGAATACAATCTAGATAAGAGTGAATTACATTTACTCGGTAAGTCTGATTATGTAATGGATTCTATGTCATCAAGAAAGATCCATAATCTTAATGAAACAGTGAAGTTGATGGTAGCAGCTGGTTATAAGAAAGAGTGCTATGATGTGTATAGCAGTTGCCGCAAGGTATTCTTGAAGGTGTGTCTCAAAAGCGAAATATTTGGGTTGCCAACGGAAAACATCAATTCCATCCATGAGTATGAAAGAGAGAAATATTTAGATATTATGTTTGATAGATGGATGACTGCTTTGGATGTAGCTATGATAATCTTGTTTCCCATTGAACAGAAACTCTGCAATCGTGTCTTCTTGGGGTTTTCCTAG 1092 0.3864 MMTIMKIIAMNLIYKYLPDIVDIPRESPSVTCLYMLYEIHDGKEVRNSATSAGEGTYPIEDTERWEDKTTDCCFIISLMILYANIWKSSSSLRFKAHTAFLVLTITSVYSFFFDKVVNGKPDAYSLVSCASFAIMSLSLSRRTHCGVEIDLLYFFLECLIVQLMKISLQLLILGAGFSYSLTILRSSLSSTDDGIENEYFDPQGENSLVLEMDSLLLEQLKTCMKGIEEENLNLVDRLMELVKEYNLDKSELHLLGKSDYVMDSMSSRKIHNLNETVKLMVAAGYKKECYDVYSSCRKVFLKVCLKSEIFGLPTENINSIHEYEREKYLDIMFDRWMTALDVAMIILFPIEQKLCNRVFLGFS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05270 363 Gene3D Exocyst complex component Exo70 202 363 - -
Vifa1g05270 363 PANTHER EXOCYST COMPLEX PROTEIN EXO70 185 361 IPR004140 GO:0000145|GO:0006887
Vifa1g05270 363 SUPERFAMILY Cullin repeat-like 220 361 IPR016159 -
Vifa1g05270 363 Coils Coil 224 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05270 Vifa-Chr1 821225103 821226852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05270 259 363 EXO70 exocyst subunit family AT5G58430 41.905 1.00e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05270 - - mtr:11426486 352.443