LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05259	ATGGCTACCATGAAAGATTTAAAACCTCGGGCACCCTTTTTCTTTACCAATGAATGGGTTTATGATGTTTTTCTCAGTTTTCGAGGAGAGGATACTCGAAAGGGTTTTACCGGGAACCTTTACAATGCTCTTTGTGGAAAAGGAATCAACACTTTCATAGATGACCAAGAGCTTAGGAAAGGAGAAGAAATCAAACCAGCTCTCAGCATGGCAATTCAACAATCAAGAATTGCAATTGTGATTTTTTCAAAAAACTATGCATCATCCACATTCTGTTTGGAAGAACTTACAAAGATCATGGAGTGTGTAAAACATAAGGGCAGGTTGGTTTGGCCAGTTTTTTATCAAGTTGACCCTTCTGATGTGCGCCATCAGAAAGGGAGCTATGCAAAATCACTGGCCAACCATGACAGAAAAAAAACCATTGACAAGGCAAAGGTCAAACAGTGGAGGTTAGCTTTGCAAGAAGCGGGTAATCTGGTAGGTTCGCATTTCAAAGACGGGTACGAATATAAGTTCATTGAAAAGATCATTCAAGAGGTCTCTGAAAAGATTCACCGTAAACCATTACATGTTGCTAAATACCCTGTTGGGTTAGGGTCTCGAGTGCAAAAAGTGAACTCACTTCTAGAGGTTGAATCAAAGGAGGGGATTCACATGGTGGGAATATATGGAATGGGTGGGATGGGCAAAACAACACTTGCATGTGCTGTATACAATTACATTGCTGATCAATTTGATAGTCTTTGTTTTCTTGGTGATATTAGAGAAAATTCAATGAAGCGCGGGTTGGTACAACTACAGGAGATGCTTCTTCTTGAATTAGCTGGGGAGAAAGATGTTAAGCTGTGCAGTTTAAATAAAGGAATCTCTATTATCAAGAGTAGGCTTCGCGGGAAAAAAACTCTACTGATTTTGGATGATGTTGACAGTTTGGAGCAACTAAAAGCACTTGCTGGTGGCCTTGATTGGTTTGGTTCTGGCAGCAGAATTATCATCACAACAAGAGATAAGCATCTACTAGATGTTTATGGTGTTGAAAAAGTCTATGAAGTAGAAGGATTGAATCATAAAGAAGCCCTCCAGTTGTTCTGTTGGAATGCTTTCAAAACACTAAAAATTGGTCGAGGATATGTGGAGATTTCGAAGAGAGTAGTACTTTATTCTAAGGGTCTTCCATTGGCTGTTGAAATAATAGGCTCTGACTTGTATGGTAAAACGAAAATGGAGTGGAAATCTGCTTTAGATACCTATGAAAAAATTCCTCATGAAAATATTCAAGAAATCTTAAGAGTAAGCTATGATGGCTTAAAAGAATTTGAGAAGGAAATATTTTTAGACATTGCTTGCTTCTTCAAAGGAGGAAAACTAAGTGATGTCATGAACATACTATGTAGCGGTCGTGGCTTTGACCCAAACTATGCTATTCAGGTGTTGATTGATAAGAGTCTGGTAAAAGTTGATGATTATCGTGTCAGGATGCATGACATGATTGAAGATATGGGTAGAGAATTTGTGCGGCTGGAAGCACCTTCAAAGCCAGGAGAACGCAGTAGATTATGGTTCTCCAAAGATATTCTTCATGTCTTCAAAGAGAACAAGGGATCTGATAAAACTAAGATCATTATGCTACGCCTACTAAAAGATAAAGAAGTAGAATGGGATGGAAATGCATTGAAGAAGATGGAAAACCTTAAAGTATTGGTAATAGAAAAAGCTCACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGATTATCCTGAATCATCATTGCCGGTTTACTTTGATCCGAAGAAACTTGTCATACTTGACTTGTCTTTGAGTTGTATTACTTTCGAAAATCAAGTGATCATGAAATTCAAATCTTTGAGGGAAATGAAGTTAAGTGGATGCCAATCATTAATGCAAGTACCTGACATGTCAGGAGCTCCGAATTTGAAGAAACTGCATCTTGATTCCTGCAAGAATTTAGTTGAAGTTCATGATTCCGTTGGGTTCCTTGAAAAACTTGAAGATTTGAATCTTAATCGTTGCACCAGTCTCAGTGTTCTTCCTCATGGCATCAACTTACCCTCTCTTAAAACCATGTCCCTTCGGAATTGTACAAGTATCAAGATTTTTCCAGAAATTTTAGATAAGATGGAAAACATAACATACCTTGGTTTAAGTGATACCGGCATAAGTGAATTGCCCTACTCCATTGGACTTCTTGTGGGGCTTGCAAACCTTTCTATAGATAGATGCAACGAATTACTTGAATTACCAAATAGTATTTTTATGTTGCCAAAACTAAAGACTTTGGAGGCTTACAGTTGTAAGGGGCTTGCACGAATTAAGAAGGGCAAAGATCATTGGCCGGAAACAACGCCTTCAGATGTGAGAAGTGTTGTTGACTTCAGCTTTTGCCATCTATCAGATGAATTTCTCGTTACACTTCTTCCTTGCTTTCACCATGTCACAAATTTATCCCTTGATTACAGCAGTATCACAATCCTTCCATCATGCATCAATGCTTGCCACTCTTTGAAGGAACTTACTTTGAATAACTGTACAGAACTTCGAGAAATCAGAGGCCTGCCACCAAACATAAAACATGTTAGTGCAATAAATTGTACATCATTGACTTCCCAATCCAAGGAAATGTTACTGAATCAGATACTACACAATTGCGGGTCCAAATATATCTGTTTTCCAGGATCAACTATCCCAAGTTGGCTCCATCAATATAGAATGGAACCGTCCCTATCCTTCAGGTTCCGAAACAAGTTGCCACCGATGGCTCTTAGTACTATGGTAGTTTCGGGGGGGTGTTTTTTTTCGAAGGTGCGTCTTAAGTATGAGTTCGACCTGGTCATTAATGGAAGTCAACGGCTGACAAAGTTTCTCCATGTTAGGTGGTCTAAAGCTAATGCATTTGATACAAATTTAAATCATATAATTCTGCTGGAACTGCGGCTCAAAGCTAGCCTTGATATGACTGGAAAGCTATGTATTAAGAATGGATGGAACCATGCTGAGATTTCATTAACAAATAAAGGTGAATATATGAAATGGATGAGACTTCATGTATGGGAACAAAAATCAAACACGGCAGATGTTCACGCTATATATCCTGATGTTGCAATAGAAGGAAAAGAAAAATGTCACACATGGAGATAA	3183	0.3842	MATMKDLKPRAPFFFTNEWVYDVFLSFRGEDTRKGFTGNLYNALCGKGINTFIDDQELRKGEEIKPALSMAIQQSRIAIVIFSKNYASSTFCLEELTKIMECVKHKGRLVWPVFYQVDPSDVRHQKGSYAKSLANHDRKKTIDKAKVKQWRLALQEAGNLVGSHFKDGYEYKFIEKIIQEVSEKIHRKPLHVAKYPVGLGSRVQKVNSLLEVESKEGIHMVGIYGMGGMGKTTLACAVYNYIADQFDSLCFLGDIRENSMKRGLVQLQEMLLLELAGEKDVKLCSLNKGISIIKSRLRGKKTLLILDDVDSLEQLKALAGGLDWFGSGSRIIITTRDKHLLDVYGVEKVYEVEGLNHKEALQLFCWNAFKTLKIGRGYVEISKRVVLYSKGLPLAVEIIGSDLYGKTKMEWKSALDTYEKIPHENIQEILRVSYDGLKEFEKEIFLDIACFFKGGKLSDVMNILCSGRGFDPNYAIQVLIDKSLVKVDDYRVRMHDMIEDMGREFVRLEAPSKPGERSRLWFSKDILHVFKENKGSDKTKIIMLRLLKDKEVEWDGNALKKMENLKVLVIEKAHFSRGPNHLPKSLRVLKWCDYPESSLPVYFDPKKLVILDLSLSCITFENQVIMKFKSLREMKLSGCQSLMQVPDMSGAPNLKKLHLDSCKNLVEVHDSVGFLEKLEDLNLNRCTSLSVLPHGINLPSLKTMSLRNCTSIKIFPEILDKMENITYLGLSDTGISELPYSIGLLVGLANLSIDRCNELLELPNSIFMLPKLKTLEAYSCKGLARIKKGKDHWPETTPSDVRSVVDFSFCHLSDEFLVTLLPCFHHVTNLSLDYSSITILPSCINACHSLKELTLNNCTELREIRGLPPNIKHVSAINCTSLTSQSKEMLLNQILHNCGSKYICFPGSTIPSWLHQYRMEPSLSFRFRNKLPPMALSTMVVSGGCFFSKVRLKYEFDLVINGSQRLTKFLHVRWSKANAFDTNLNHIILLELRLKASLDMTGKLCIKNGWNHAEISLTNKGEYMKWMRLHVWEQKSNTADVHAIYPDVAIEGKEKCHTWR	1060

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05259	1060	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	448	IPR027417	-
	Vifa1g05259	1060	SUPERFAMILY	"Winged helix" DNA-binding domain	425	530	IPR036390	-
	Vifa1g05259	1060	ProSiteProfiles	TIR domain profile.	19	185	IPR000157	GO:0007165
	Vifa1g05259	1060	PRINTS	Disease resistance protein signature	296	310	-	-
	Vifa1g05259	1060	PRINTS	Disease resistance protein signature	696	712	-	-
	Vifa1g05259	1060	PRINTS	Disease resistance protein signature	389	403	-	-
	Vifa1g05259	1060	PRINTS	Disease resistance protein signature	220	235	-	-
	Vifa1g05259	1060	Gene3D	Ribonuclease Inhibitor	534	696	IPR032675	-
	Vifa1g05259	1060	SMART	till_3	20	160	IPR000157	GO:0007165
	Vifa1g05259	1060	Gene3D	-	17	182	IPR035897	-
	Vifa1g05259	1060	Gene3D	-	183	348	IPR027417	-
	Vifa1g05259	1060	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	832	IPR044974	GO:0006952
	Vifa1g05259	1060	Pfam	TIR domain	21	187	IPR000157	GO:0007165
	Vifa1g05259	1060	Gene3D	-	354	438	IPR042197	-
	Vifa1g05259	1060	Gene3D	Ribonuclease Inhibitor	697	900	IPR032675	-
	Vifa1g05259	1060	Pfam	NB-ARC domain	204	435	IPR002182	GO:0043531
	Vifa1g05259	1060	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	162	IPR035897	-
	Vifa1g05259	1060	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Vifa1g05259	1060	SUPERFAMILY	L domain-like	539	894	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05259	Vifa-Chr1	819252292	819258822	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05259	15	786	WRKY Transcription Factor Family	AT4G12020	30.875	2.91e-88	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05259	-		-	ccaj:109800328	1251.11