Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05252 ATGGAAGAGATTAATGATGTTGAAAAAGTTGATGAAGTTATATTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGTTTTTACCTAAAGAGAAAAGTTCAACAAAGACCTCTATCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAATTTGCTAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACTGGTACTGATAGACCTATCTATTCCTCAGAAGGTTCCAAGTGCATTGGTTTGAAGAAATCATTAGTTTTTTACAAAGGTAGAGCTGCTAAAGGGCTCAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTCTCTCGTAGATCCGCTTTCATCAAAGAAGTACTTCGACAAAACTATTCCTGCTAATGAATCTTGGGCTATCTGCAGAATATTCAAGAAAACAAATTCTACAACTCAAAGAGCTTTATCGCACTCTTGGGTTTCTTCTCTTTCTGAAACAAGAGCCTCTATCCTAACCAAAAATCAAGAAATCAACCAATTTTGTTCAGACAACATGTCACAAACAAAGAAAGAAACCTTATCAAACAACTTCTTCACTAACAACAATGATAATAGCCAAAACTTTGATGTTGATCTTACCTCTTATAAATCCATAACTAATCATCACTTACCCATTTCAAATGAATATCTTAATACAAACTTGATATTCTCACCATCTCAACTACAAACATCTAATAACACTTCCAAATCCACAATGGATGTTTCATCAATGTTGTTGAGCATGTCATCATCATCCTCAATGATTGGTGATTTTAGCAAGACATGTGATGAGGTTACAACTACAAATTTCAATAGTGGGTTGCAAGAGCAATTTAGTGACTATTCATTGCAAATGCAAAGTACATTTGATAACCAATTTGTTAATGATGCATTGGTAAAGGCTCCTTATTACAATGTGAATGTGCCTCGTATTGATGAACAAGAATTGATGCATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTTTGATGTTCCCTCTAGTTATTATTCTACAACAACCAAGTGTTACACTTAA 1179 0.352 MEEINDVEKVDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGLKTDWMMHEFRLPSLVDPLSSKKYFDKTIPANESWAICRIFKKTNSTTQRALSHSWVSSLSETRASILTKNQEINQFCSDNMSQTKKETLSNNFFTNNNDNSQNFDVDLTSYKSITNHHLPISNEYLNTNLIFSPSQLQTSNNTSKSTMDVSSMLLSMSSSSSMIGDFSKTCDEVTTTNFNSGLQEQFSDYSLQMQSTFDNQFVNDALVKAPYYNVNVPRIDEQELMHFNIGDAWKSNLLWDTSFCPFDVPSSYYSTTTKCYT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05252 392 FunFam NAC domain-containing protein 35 23 175 - -
Vifa1g05252 392 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Vifa1g05252 392 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Vifa1g05252 392 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Vifa1g05252 392 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Vifa1g05252 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05252 Vifa-Chr1 818290000 818291737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05252 8 302 NAC Transcription Factor Family AT1G26870 58.786 6.87e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g05252 NAM 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05252 - - gmx:100783995 483.026