Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05250 ATGATGATTCTCACAACCCTTTTGGTCATTCTTGTGACACTATTGATTAAAGTTTTTTATGACACAATTTCATGTTACTGGCTTAATCCATTAAGCATCAAGAAGGTTATGGAGAAACAAGGTGTGTACTGTCCTAAACCTAGGTTTCTATCAGGTAACCTTAAAGAGATCTCATCTTTTGTTTCCGAAGCAACTTCTCAAGACATGAAATCAATCAACCATGATATTGTTGGTCGTCTTTTGCCTTATTTTGTTGCTTGGTCCAAGCAATATGGAAAAAGATTCTTCTATTGGAACGGAATAGAGCCAAGATTGTGTCTAACAGAAAGTGAATTGATCAAGGAATTTCTTTCGAAATATAGTACAATATCTGGGAAATCATGGCAGCAACAACAAGGATCAAAGAATTTTATAGGAAAAGGATTGTTGATGGCAAATGGTGATGATTGGTATCACCAACGTCACTTAGTTTCTCCTGCATTCATGGGAGAAAAACTTAAGAGTTATGCTGTACACATGATGGAATGTACTACAGAAATGCTTGAATCACTTCAAAATGCAACATTGGATTGTGGCAAAAATGAGATTGAAATTGGAGAATATTTCACAAAACTCACTGCAGATATTATTTCAAGGACTGAGTTTGGTACAAATTATGAAAAGGGAAAACAAATATTTCATCTTCTCACGCAATTACAAGCTCTTTGTGCTCAAGCAACAAAAAAGCTTTGGTTTCCTGGAAGCAGGTTTTTCCCTAGTGCTTATAATAGAGAGATCAAGTCGTTGAAGATGGAAGTAGAAAGACTGTTGAAGGAGATAATACACAGTAGAAAAGATGGTGTGAAAATGGGAAGAAGCAATTCTTATGGGAATGATTTATTGGGAATACTTTTAGATGAGATTGAAAAAAGTGGTAGCGTAAACCTCCAATTAGTTATGGATGAATGCAAAACATTCTTCTTTGCTGGACATGATACAACTTCACTCTTACTCACATGGACTGCTATGTTGCTTGCTACTAATCCAGATTGGCAAGAAAAAGTTAGAAATGAAGTTAAAGAGATTTTCAATCAAGGAATGCCTTCTATTGACCAACTCTCCAAGCTCAATGTGTTGCATATGGTAATCAATGAGTCAATGAGACTCTATCCTCCAGCAACCCTACTTCCTCGAATGGCTTTTCAAGACATTGTTTTAGGCGATCTTTATATTCCTAAAGGCTTATCAGTATGGATTCCTGTGTTGGCTATTCATCATAGTGAAGAGTTATGGGGAAAAGATGCAAATGAATTCAATCCACAAAGATTTGCTTCAAAATCATTCATGTCTGGTCGTTTCTTACCATTTGCTTCTGGCCCAAGAAACTGTGTTGGACAATCATTTGCTATTATGGAAGCTAAGATTATTTTGGCAATGTTGGTTTCTAAGTTTAGCTTCACCATTTCTGAGAATTATAAACATGCACCAATAACTGTCCTTACTATTAAGCCTAAATATGGTGTGCAAATTTGTTTAAAGACATTAGATTCATAA 1533 0.3555 MMILTTLLVILVTLLIKVFYDTISCYWLNPLSIKKVMEKQGVYCPKPRFLSGNLKEISSFVSEATSQDMKSINHDIVGRLLPYFVAWSKQYGKRFFYWNGIEPRLCLTESELIKEFLSKYSTISGKSWQQQQGSKNFIGKGLLMANGDDWYHQRHLVSPAFMGEKLKSYAVHMMECTTEMLESLQNATLDCGKNEIEIGEYFTKLTADIISRTEFGTNYEKGKQIFHLLTQLQALCAQATKKLWFPGSRFFPSAYNREIKSLKMEVERLLKEIIHSRKDGVKMGRSNSYGNDLLGILLDEIEKSGSVNLQLVMDECKTFFFAGHDTTSLLLTWTAMLLATNPDWQEKVRNEVKEIFNQGMPSIDQLSKLNVLHMVINESMRLYPPATLLPRMAFQDIVLGDLYIPKGLSVWIPVLAIHHSEELWGKDANEFNPQRFASKSFMSGRFLPFASGPRNCVGQSFAIMEAKIILAMLVSKFSFTISENYKHAPITVLTIKPKYGVQICLKTLDS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05250 510 SUPERFAMILY Cytochrome P450 77 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 Coils Coil 259 279 - -
Vifa1g05250 510 Gene3D Cytochrome P450 64 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 Pfam Cytochrome P450 83 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 500 - -
Vifa1g05250 510 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05250 510 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05250 Vifa-Chr1 817897495 817901140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05250 1 369 Cytochrome P450 AT5G38450 65.867 1.23e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05250 K10717 - gmx:100812567 812.372