Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05247 ATGATGATTCTCACAATCCTTTTGGCCATTCTTGTGACACTAATGATTAAAGTTTTTTATGACACAATTTCATGTTATTGGCTTAATCCATTAAGCATCAAGAAGATTATGGAGAAACAAGGTGTGTTTTGTCCTAAACCTAGGTTTCTATCAGGCAACCTTAAAGAGATATCATCTTTCGTCTCCGAAGCAACTTCTCAAGACATGAAATCAATCAACCATGATATTGTTGGTCGTCTTTTGCCTCATTTTGTTGCTTGGTCCAATCAATATGGAAAAAGATTCTTCTATTGGAATGGAATTGAGCCAAGATTGTGTCTAACAGAAACTGAATTAATCAAGGAATTTCTTTCAAAGTATAGTACAATATCTGGGAAATCATGGCAGCAACAACAAGGATCTAAGAATTTTATAGGAAAAGGTTTGTTGATGGCAAATGGTGATGATTGGTACCACCAACGTCACTTAGTTTCATCTGCATTCATGGGAGAAAAACTTAAGAGTTATGCTGTACACATGATGGAATGCACTAAAGAGAAGCTTGAATCACTTCAAAATGCAATATTGGAGAATGACAAAAAAGAGGTTGAAATTGGAGAATATTTCACAAAGCTCACTGCAGATATTATTTCAAGAACTGAGTTTGGTACAAATTACAATAAGGGAAAACAAATATTTCATCTTCTCACACAATTACAAGCTCTTTGTGCTCAAGCAACTACAAAGCTTTGGTTTCCTGGAAGTAGGTTTTTTCCAAGTACTTATAATAGAGAGATTAAGTCATTAAAAATGGAAGTGGAAAGACTCTTGATGGAGATAATACAAAGTAGAAAAGATTGTGTAGAAATGGGAAGAAGCAATTCTTATGGGAATGACTTATTGGGAATCCTTTTAGATGAGATTCAAAAGAGTGGTAAATTAAACCTACAACTAGTTATGGATGAATGCAAAACATTCTTCTTTGCTGGACATGAAACAACTGCACTTTTACTCACATGGACTGCTATGTTGCTTGCTACTAATCCAAGTTGGCAAGAAAAAGTTAGAAATGAAGTTAAAGAGATTTTCAATCAAGGAATGCCTTCTATTGATCAACTCTCCAAGCTCAAAGTGTTGCATATGAAAATCAACGAGTCAATGAGACTCTATCCTCCAGCAACCCCTACTTCCTAG 1173 0.3495 MMILTILLAILVTLMIKVFYDTISCYWLNPLSIKKIMEKQGVFCPKPRFLSGNLKEISSFVSEATSQDMKSINHDIVGRLLPHFVAWSNQYGKRFFYWNGIEPRLCLTETELIKEFLSKYSTISGKSWQQQQGSKNFIGKGLLMANGDDWYHQRHLVSSAFMGEKLKSYAVHMMECTKEKLESLQNAILENDKKEVEIGEYFTKLTADIISRTEFGTNYNKGKQIFHLLTQLQALCAQATTKLWFPGSRFFPSTYNREIKSLKMEVERLLMEIIQSRKDCVEMGRSNSYGNDLLGILLDEIQKSGKLNLQLVMDECKTFFFAGHETTALLLTWTAMLLATNPSWQEKVRNEVKEIFNQGMPSIDQLSKLKVLHMKINESMRLYPPATPTS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05247 390 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 Pfam Cytochrome P450 84 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 Coils Coil 174 194 - -
Vifa1g05247 390 Gene3D Cytochrome P450 28 390 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 PANTHER CYTOCHROME P450 FAMILY MEMBER 18 387 - -
Vifa1g05247 390 Coils Coil 259 279 - -
Vifa1g05247 390 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05247 390 SUPERFAMILY Cytochrome P450 77 387 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05247 Vifa-Chr1 817637641 817645997 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05247 1 369 Cytochrome P450 AT5G38450 66.667 2.39e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05247 K10717 - gmx:100812567 592.038