Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05246 ATGAGAATGTCTTGTAATGGATGCAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGAATGGATCAAGTGTCCTAAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCACCAACCTCATCAATTCTGGTCAAGAAAATCTTCGCCCAGCAATTTTTCGATCATTGCTATATGAGGCTTGTGGGAGGATTGTGAACCCGGTTTATGGTTCTGTGGGTTTATTATGGTCTGGAAGCTGGCAGCTCTGTCAAGCCGCGGTTGAAGCCGTTTTAAAAGGCGAGCCGATTAAGCCGATTGCTTCCGAGTCTGCGAGTGGCCCACCGTTGAAGGCCTATGACATACGCCACGTGTCAAAAGATGGAAACTCGGAGGAGACTCAGCGAGTCAAGACTCGGTCTCGGTTCAGACGAGCTGTGAAGTCGGAGCTTAGGAAAGAAACCGGTTCAGTTGAAGAGGCGAACCGGTCTGAATCCTTGCGGAGTGAACCGGGGAAAGATAATGAGAGTGGGGTTTCGGTGGAAACTTCGATACTTTTTCATGAAGAACCGGAGTCTGAAGCTAAGGTAAATGACCAAGCCCAGGAAGGTGTGAGTGATGTTGGTTTGGAGCTTAGGCTTGGGATCGAACCGGTTTCACGTGAACCGGAATATTTGGTTCCCATAAAGAAGAGAAAAATTGAGATGAAGGATTGTAGTGTTTCTTGCAAAGTAAAGCTTGGGCTTGAGTTTGTGGCTTAA 777 0.4607 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKCPKSQANATLFLAKFYGRAGLTNLINSGQENLRPAIFRSLLYEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPIKPIASESASGPPLKAYDIRHVSKDGNSEETQRVKTRSRFRRAVKSELRKETGSVEEANRSESLRSEPGKDNESGVSVETSILFHEEPESEAKVNDQAQEGVSDVGLELRLGIEPVSREPEYLVPIKKRKIEMKDCSVSCKVKLGLEFVA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05246 258 MobiDBLite consensus disorder prediction 152 177 - -
Vifa1g05246 258 MobiDBLite consensus disorder prediction 127 145 - -
Vifa1g05246 258 MobiDBLite consensus disorder prediction 127 185 - -
Vifa1g05246 258 PIRSF AS2 1 171 IPR017414 -
Vifa1g05246 258 PIRSF AS2 143 258 IPR017414 -
Vifa1g05246 258 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vifa1g05246 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 217 - -
Vifa1g05246 258 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05246 Vifa-Chr1 817353314 817354357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05246 1 239 AS2 family AT3G02550 57.371 1.39e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g05246 LOB 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05246 - - aprc:113867933 343.584