Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05238 ATGGATATCTCAGAAATCGCAAAAAAACTCGGACTCTCCGATTCAAAGCTCGTCATCCGAAAAGCCGCTGAACTCCGTCGCCTCTGCGATGTACACTTCGATTCCTCGATCATCGGCGTCGGCGAAGTTGCCAAAGCTATCATCTGTATGGAGATTGCAGCGACGAGGCTCGGTGTTCTCTTTGATCGATTTTCGGCAGTGAAACTCAGTGGAATGTCTGAGAGAGCTTATATCAGATCTTACAATTCACTTCACAATGGCATTGGTGTCAAGTTGAAGCTTGATGTGAGAGAATTGGCTATTCGATTTGGTTGTGTGAGGATCATACCTTATGTTCGCGACGGTCTCAAGCTTTATAAGGATAGGTTTCTTGCTTCGTTGCCGGCTGCTCGCCGTGCTAGTGCTGATTTTACTCGTCCGGTGTTCATGGCTGTTGCTTTTTATTTATCTGCAAAGAAACAAAAGCTTAAAGTTGATAAGATTAAGCTAATTGAACTTTGTGGTACTTCTGAATCGGAATTTTCTAGTGTTTCCACTTCTATGAAAGACTTGTGCCATGATGTTTTTGGGGTAGCTAAAGAAAAGAAAGACCCTAAAGAATTAAAGACCAATAGAGATCTGCTTGATGTATTGCCAAGCAAAAGAAAAGCTGAGGATGGTGGCTATCTATCTGATGATGGAGTAGAGGTTTCATGTTATAAAAAAAAGAAACAGATGGAAACACATGACTATGAGAAGTGGAAATCTTCTGTCCTTGCATCCAATAAACAAGATAAGAAAGAAGTGCATTGCAAGAAACCAATACAAACAAGCCTAAATTTTGTCAAGGAAGCTCCTGAGACCCAGAAGTTGGAGGTGTTGTGA 864 0.4155 MDISEIAKKLGLSDSKLVIRKAAELRRLCDVHFDSSIIGVGEVAKAIICMEIAATRLGVLFDRFSAVKLSGMSERAYIRSYNSLHNGIGVKLKLDVRELAIRFGCVRIIPYVRDGLKLYKDRFLASLPAARRASADFTRPVFMAVAFYLSAKKQKLKVDKIKLIELCGTSESEFSSVSTSMKDLCHDVFGVAKEKKDPKELKTNRDLLDVLPSKRKAEDGGYLSDDGVEVSCYKKKKQMETHDYEKWKSSVLASNKQDKKEVHCKKPIQTSLNFVKEAPETQKLEVL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05238 287 Gene3D - 92 188 - -
Vifa1g05238 287 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 6 1 276 IPR020529 GO:0005664|GO:0006260
Vifa1g05238 287 Pfam Origin recognition complex subunit 6 (ORC6) 3 91 IPR008721 GO:0003677|GO:0005664|GO:0006260
Vifa1g05238 287 CDD Orc6_mid 93 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05238 Vifa-Chr1 815750182 815753089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05238 1 286 Core DNA Replication Machinery Family AT1G26840 67.133 1.28e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05238 K02608 - gmx:100777539 450.284