Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05234 ATGTCCATGAAGAAGAACACTGCAGTTTTACAAAATCCAGAAGTGATGTTGCAAAAGAAAGCTATGGCTATTGAGAAGATCAATGCATATATGCAAAAGTTGAAAACAATGGAAAAGAAATTTGATCCATTACCTCATTTTACTTTGCATAGAGTGTTATCTCAAATTTCTCCACAATTTTATACTAAAGATGAGTTAACACAAATTGAGAAAATCAATCACATTTTGTGTGAAGAAACAAATCCCCCTCTTATTTCACAAAGTAAAGTGAAAAGAGTAGAAGTCAATGATAAAAAAAGTTGTTGTCCAAGTGATAAAGATATCATCTTTGATGAAGGTAGAAGAGTGAAACCAAAATCAGCAATTAGGAGGAAACCAATAATTCGCAGAAAAGAAACTTTGTTGTCACCGCCACCAGAATTGCCTAGTCATGTTTATAACATGATCAAAGTGTTGAATGGTAGTGATATTAAATATATCATGTGTAAGGAATTGTTTAAGTCAGATCTCAACAATTGTCTCAATCGTCTTTCAATGCCAATTACACAAATCAAATCTGATTTCCTCACAGAAATAGAAAAGGCAACCTTGGAAACAAGGGATCAAGAAGAAAAACCGATTGGTATAAAAGTGACTGTGTTAGATCCTTGTTTTAACGAATTCTCGTTGTTTTTGAAGAAGTGGAACATGAAGACTACTAGTATTTATATTCTTCATCAAGATTGGACACATGTTTTGTTGGAGAATAATTTTAAAGAAAATCAAAAACTTGACATTTGGTCATTTAGGGTTAATGAAAAGTTATAA 807 0.3185 MSMKKNTAVLQNPEVMLQKKAMAIEKINAYMQKLKTMEKKFDPLPHFTLHRVLSQISPQFYTKDELTQIEKINHILCEETNPPLISQSKVKRVEVNDKKSCCPSDKDIIFDEGRRVKPKSAIRRKPIIRRKETLLSPPPELPSHVYNMIKVLNGSDIKYIMCKELFKSDLNNCLNRLSMPITQIKSDFLTEIEKATLETRDQEEKPIGIKVTVLDPCFNEFSLFLKKWNMKTTSIYILHQDWTHVLLENNFKENQKLDIWSFRVNEKL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05234 268 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 48 267 IPR005508 GO:0003677
Vifa1g05234 268 Coils Coil 20 40 - -
Vifa1g05234 268 Gene3D - 150 268 IPR015300 -
Vifa1g05234 268 Pfam B3 domain-containing protein At2g31720-like 141 246 IPR005508 GO:0003677
Vifa1g05234 268 SUPERFAMILY DNA-binding pseudobarrel domain 159 265 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05234 Vifa-Chr1 815121640 815122446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05234 148 268 B3 DNA Binding Superfamily AT1G05930 26.016 2.55e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05234 - - psat:127101787 363.614