Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05220 ATGGGAATAGAAGAAGAGAAAACACACCCAAACATGCAATGGACAGATGAAGAAACAAAAAGACATGTATCTCATTCAGGTTTTCGCGTGGGAGCTGAATGCGAGTTCTCTTCCACTATATTGACCTCAATTACACGACAACATAATATAACTCAAAGCATCAACGTAAATGAAATCTCTCATGATTCCGAAGCAAGTTCGAGAAATCAAGCTTCGCGTAACAGCGACTCCACTCGTTTATCGCTTACTCACTTCCTCGATCGCAAACTGCATAACTCTTCAACAGTCCCTCAAACCGTTCTGGGGAAATTGACGCCTTTTCAATCACCGGCCAGTGAGCAAGATGGAAGCGTCAAACTAACTGAAGAAGAGAGAAAGTCTGCAACTGCTGATGAGAAGTTGATTTTGGGAATGTTCAAGCAAGAGGGCAAATGTGACTTTGTTCCTCCGTTAGATCTTGATGAGTTAGGAAATTCTATGGCAGGTGATGGTCAAGGAGCTAGGAAAAGGAAAAATCCATTTGAAGGTTTGGATTCCTATCCCAATGAACTTGAGCACGCGGGAATTTCTCCGCCACCCACTTGTGAATTTGACAAGGTTTTAGGAGCTATTGTGAGGATGGGTCATTATCCCACTGCAATTTCTCTTTTTTCGCAGTTTCAACTTAGGGGAATTTCACCTTCCATTGCTACTTTCAGCATCTTGATTAACTGTTTTTGTCATCAATCTCATATGGGTTTTGCTTTTTCGTTATTGGGTACCATTCTTAAGAGTGGCTATGAACCTAACATGGTGACTTTTAATACAATTATTAATGGTTTTTGTATGAATGGGATGATTTTTAAAGCTTTGAACTTTTACCAAGACCTAGTAGCCCAAGGGTATCTTTTTGATGAGTTTACTTATGGGATTTTAATCAATGGGTTGTGTAAAAATGGGCAAACTAGAGCTGCGTTGCATTTGATACAAGAGATGGAGGAACGGTCGGTTGAACCGAATCTAGTAATGTATAGTGCAGTCATTGATGGACTATGCAAAGATGGACTTGTCACAGATGCGCTTAGTTTGTGTTCTCGGATGGCTGATAAGGGAGTTTTACTTGATGTTGTCACGTACAACTCTTTAATTCGTGGTTGTTGCAGTCTGGATCCCTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCCGGTGCCGGGACAAAAGAATATGTTCATGTCCGTGTACAACAGCGTAACGGAAGGAAAAGCTTAACAATTGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGCTGTAATGGTACTGTTGTCGAGGACCCTGAGTTGGGTCAGGTCATACAACTTCAGGGAGATCAAAGGAAGAATGTTTCTACTTTCCTTGTGCATGCTGGCATTGTAAAAAAGGAGAATATCAAGCTTCATGGTTGA 1455 0.411 MGIEEEKTHPNMQWTDEETKRHVSHSGFRVGAECEFSSTILTSITRQHNITQSINVNEISHDSEASSRNQASRNSDSTRLSLTHFLDRKLHNSSTVPQTVLGKLTPFQSPASEQDGSVKLTEEERKSATADEKLILGMFKQEGKCDFVPPLDLDELGNSMAGDGQGARKRKNPFEGLDSYPNELEHAGISPPPTCEFDKVLGAIVRMGHYPTAISLFSQFQLRGISPSIATFSILINCFCHQSHMGFAFSLLGTILKSGYEPNMVTFNTIINGFCMNGMIFKALNFYQDLVAQGYLFDEFTYGILINGLCKNGQTRAALHLIQEMEERSVEPNLVMYSAVIDGLCKDGLVTDALSLCSRMADKGVLLDVVTYNSLIRGCCSLDPFAEANAEDSGAGAGTKEYVHVRVQQRNGRKSLTIVQGLKKEFSYSKILKDLKKEFCCNGTVVEDPELGQVIQLQGDQRKNVSTFLVHAGIVKKENIKLHG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05220 484 SUPERFAMILY eIF1-like 382 484 IPR036877 GO:0003743|GO:0006413
Vifa1g05220 484 Gene3D - 390 484 - -
Vifa1g05220 484 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g05220 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vifa1g05220 484 NCBIfam translation initiation factor SUI1 380 484 IPR005874 GO:0003743
Vifa1g05220 484 CDD eIF1_SUI1 401 484 IPR005874 GO:0003743
Vifa1g05220 484 NCBIfam pentatricopeptide repeat 265 298 IPR002885 -
Vifa1g05220 484 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Vifa1g05220 484 NCBIfam pentatricopeptide repeat 300 333 IPR002885 -
Vifa1g05220 484 NCBIfam pentatricopeptide repeat 231 263 IPR002885 -
Vifa1g05220 484 MobiDBLite consensus disorder prediction 101 116 - -
Vifa1g05220 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vifa1g05220 484 MobiDBLite consensus disorder prediction 101 126 - -
Vifa1g05220 484 FunFam Eukaryotic translation initiation factor SUI1 373 484 - -
Vifa1g05220 484 ProSiteProfiles Translation initiation factor SUI1 family profile. 403 473 IPR001950 GO:0003743|GO:0006413
Vifa1g05220 484 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 188 388 - -
Vifa1g05220 484 Pfam PPR repeat family 332 381 IPR002885 -
Vifa1g05220 484 Pfam PPR repeat family 262 311 IPR002885 -
Vifa1g05220 484 Pfam PPR repeat family 200 241 IPR002885 -
Vifa1g05220 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vifa1g05220 484 Pfam Translation initiation factor SUI1 400 474 IPR001950 GO:0003743|GO:0006413
Vifa1g05220 484 Gene3D Tetratricopeptide repeat domain 178 255 IPR011990 GO:0005515
Vifa1g05220 484 Gene3D Tetratricopeptide repeat domain 327 389 IPR011990 GO:0005515
Vifa1g05220 484 Gene3D Tetratricopeptide repeat domain 256 326 IPR011990 GO:0005515
Vifa1g05220 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vifa1g05220 484 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05220 Vifa-Chr1 813547720 813551627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05220 381 484 Eukaryotic Initiation Factors Gene Family AT1G54290 86.538 5.32e-59 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05220 - - psat:127105702 377.096