Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05203 ATGAGTGATGATGTTAGTGTGAATGGTTCTTCATGTTTAGCAATAACAGATAAAAAGAAGAACAATGAAAAACAAAATGGTGGTTGTGTTGGTATTTTCTTTCAACTATTTGATTGGAATAGAAGATTCGCCAAAAAGAGATTTTTCTCCAAGAAACTTCTTCCTCCTGCTAGTGCAAAACAAGATTCTATGAACAAGTTTAAAGGAGATGAGAAAATGCCGAATTCAAAGCTTCATTTTATTGCTAATGGGAACAACGGAGGTTTCTCGAATACCATGGAAGGAGGAAATTGTGTTATCGAGGTAGAACGAAAGCATGAAATGAAAGCTCCGAGTATTGTAGCTAGGTTGATGGGTCTAGAATCAATTCCAGCTTCAAAGAGAGATCATAAGTCCAAGAAATCTTCATTTTTTGATAGTGATGTTGGTGAGGAGTCTTTGGAAATCGGAGTTGCGAATGCAAGTCATGATTCAAGGCCTCAGAAGGTAAGGAAAACGGAAGGAAATGAAAGAAGAGCAATGACTAGGTTTGGTGCCGAGGCATTGCAAATCAAGAGTGTTTTGTCACAAGTGAGAAAGTCTAGTCATCATCACAATCACCATGGCGCTAAATTTGTTTCCCCTTTGAAGAGTCCGAGAGTTTCTTCGGGAAAGAGTGCATTTCGAAGCTCAAGGTTGATAGAAGCAGCTACTAAGATCTTGGAACCTGGCTTGCAGGCTACAAGCAGATCCAAATATTCTCTTGCATCTTCTATTTCTAAGTGTCCTCGTAAGAACGGCGTTGTCACCGATATGGTTGGAACTCGGACGGAAGCTATAAACAACCGATCATGTTATAATGCCGGCATAGACAAGTTGCTGGTGGAGCATACTTGTGAAAATTGTGGTAATTTGCTTGACGTTGAGATCAGCAAACCTATTGTTTCAGATGTTTTCACCGGCTTCTCTTCTGAATCGGCGCAAAAAGGAAGATCATTCAATCCTTCTCACGAAAACGACGTAGTACTTCTCAGAAGTCAAGAGAAGATCATAACTCTTGTTGATGAAGATGTTAAAAAGAATGCTTATTCTTGTAATGAAGATGTTAAAAAGAATGCTTATTCTTGTAATGAATCTACTTCGAGAAGAATCCACGTTCATGCTAAATGTGATTCATCACGTCAACCGCGTGGAGGCTTAGAGGGTGACGACTACACATCTTCTTTTAACTTCGGAAGCAAAACTCAAACACGAGAACGTATGCTAAACGGTGAAAGAATGGCTTTTAGATTTGAAGCTAGAAATAGTAATATGCAAGTGAAGAGAGCTTCATCAGCTGCAACTGCAAGCACTGTGAGTAGAAATAAAGACTTTGATGGTTTGAATCGAAGCCTGAGTGGTCGAACTCGTATGAGGTCTCCTACCAAGTTGGATAGTTGCAAATTTGATCTCGAGAGGAAAAAAAGGGCCTTAAATGTCTCACAAGTTGAACGTATAGCTTCTGTCAATTTGGTTGCATCGAGACATAGAAATGTTGGTTCAAATGCACAAGGAGGAAAAAGGAGAAACTTCGATGCTTTCTCTCCAAAAAATTCTAATGTCAAATGTAGAAAAAGTGGTTATCAAAAAACCGATAAGATTAACGATAATAAGATCGATAAGGTCGAGACAAGAAGTGCTAGTAAGGTTAAGACTTGTTTCCAAAGACATCATTCACCCTTGAGAGAGGATGTTTTAGGCGCTTTTCTAGAACAGAAGTTGAAAGAATTGAAATCTAGGGAAAACGAGCTGGCTAATGGCGATCAACCTAGAAGATCAACTGTGTTGATTCTTCAAGAATTGATATCTGTTCTGAATGCAGGCACAGGGTATGGTTTTCACACCGGCTCTATAAATTGTTCATACGATCAACCAAAACGGTTTGAACCTGACATCAAACTTTTAGATTCCGCAACATTATTTAACACAGGGAAGATAGGTTGTAAGATATTGACAGAACTTGTTAACCGAATTCATACAACATTGCAAAGTTTAAATTCATTTTGGCCAAGATTTACAAAAAACAAGCTCGATCATATGAAAGATGTCATCTTCATTGCTGAATTGGTTCTTGGAAATGTCACTAGGCAATGTGAGGATCTGCCACAGCTTCTCATTTCTTGTATTCTTGTCGATGAACTCGACAACATGGCAACCGATGATATGTGGAGAAATTTCAATCAAAGCCAAGTTAAGGGATTTCTATTTGATTGTGTAATTGAATATCTAGAATCAAATTGCTGCCATAATTATTACAATGTATTTAGTTTAAGGTGTGCATGGACAAAGGTTCCTTTATGCATGAAAGGTGAGATTTTGGTTGAAGAGGTTAAGAGTGAGATTAAGAAGTGGGAATTTATAGCTGGAATGGAACCAGAAGAAATAATTGATTGGGAGATGAGTCACTCATTGGGAAAATGGACTGATTTCAATCTTGAAGCTTTTGAGTTTGGTGTTGATATTGAGGATTATGTGCTTCAAATTTTGGTTGATGAAATTGTTGAAGACTTTGTAGGTTTTAGGCTGTACACTTTTTGA 2556 0.3803 MSDDVSVNGSSCLAITDKKKNNEKQNGGCVGIFFQLFDWNRRFAKKRFFSKKLLPPASAKQDSMNKFKGDEKMPNSKLHFIANGNNGGFSNTMEGGNCVIEVERKHEMKAPSIVARLMGLESIPASKRDHKSKKSSFFDSDVGEESLEIGVANASHDSRPQKVRKTEGNERRAMTRFGAEALQIKSVLSQVRKSSHHHNHHGAKFVSPLKSPRVSSGKSAFRSSRLIEAATKILEPGLQATSRSKYSLASSISKCPRKNGVVTDMVGTRTEAINNRSCYNAGIDKLLVEHTCENCGNLLDVEISKPIVSDVFTGFSSESAQKGRSFNPSHENDVVLLRSQEKIITLVDEDVKKNAYSCNEDVKKNAYSCNESTSRRIHVHAKCDSSRQPRGGLEGDDYTSSFNFGSKTQTRERMLNGERMAFRFEARNSNMQVKRASSAATASTVSRNKDFDGLNRSLSGRTRMRSPTKLDSCKFDLERKKRALNVSQVERIASVNLVASRHRNVGSNAQGGKRRNFDAFSPKNSNVKCRKSGYQKTDKINDNKIDKVETRSASKVKTCFQRHHSPLREDVLGAFLEQKLKELKSRENELANGDQPRRSTVLILQELISVLNAGTGYGFHTGSINCSYDQPKRFEPDIKLLDSATLFNTGKIGCKILTELVNRIHTTLQSLNSFWPRFTKNKLDHMKDVIFIAELVLGNVTRQCEDLPQLLISCILVDELDNMATDDMWRNFNQSQVKGFLFDCVIEYLESNCCHNYYNVFSLRCAWTKVPLCMKGEILVEEVKSEIKKWEFIAGMEPEEIIDWEMSHSLGKWTDFNLEAFEFGVDIEDYVLQILVDEIVEDFVGFRLYTF 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05203 851 Pfam DUF761-associated sequence motif 103 129 IPR032795 -
Vifa1g05203 851 MobiDBLite consensus disorder prediction 505 530 - -
Vifa1g05203 851 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 12 842 - -
Vifa1g05203 851 MobiDBLite consensus disorder prediction 380 404 - -
Vifa1g05203 851 Pfam Domain of unknown function (DUF4378) 709 838 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05203 Vifa-Chr1 812433744 812436828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05203 1 843 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 29.310 4.48e-76 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05203 - - tpra:123910908 1098.57