Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05201 ATGGCACGCCCGCAGCGCCTTCTTTACGCACTCTGCTCCTCCTCCGCCACAACGGCGGGGTCCCTCATCGGTGGCACTTTCCACCCCCGATATTTCTCAGCTGGGAGCGTGGCTCACGCTACGGCGGCGGCGAATATTGATAAGGATCCTTGGTGGAAGGAGTCGATGAAAAAGGTTCGCAACATTGGGATCTTAGCGCCCATGGATTCCGAGAAGACGACGTTGGCGGAGCAGATACTGTTGTACACGGATCAGATCCACAAGATGCACGAAGTTCGCGGGAAAGGTGGTTGTGGTGCGACGATGGATAGTATGGATTTGGAGAGAAAGAATGGAATCACCATTAAGTCTGCTTCTACTTATTGCAATTGGAAAGGCTCTAAGATCAACATAATTGAACACGTTGATTTCACCACTGAAGTTGAGAGGGCTTTGCGTGTTGTTGACGGCGCCATTCTTGTTCTTTGTAGTTTTGGTGGTGTGCGAAGTCACTCCATTACTGTTGATTGCCAAATGAGAAAAAATGAAGTTCCAAGAATTACATTTATCAACCAGCTTGATCAAATGGGAGCAGATCCATGGAAAGTTTTAAACCAGATTAGATCTCACTTTCCTCGTCGTACTGCTGCAATTCAAGTTCCAATAGGTTTGGAGAATGAATTCAAGGGACTTGTTGATCTTGTCAAGTTAAAGGCCTATTATTTTGAAGGTTCACACGGCAAGGAAAAGGTACCTTCAAACATGGAAACTTTGGTGGCAGATAAAAGACGGGAACTCATTCGAACAGTGTCTGAGGTTGATAAAATACTTGCCGGAGCTTTTCTCAGTGACGAGACCATTTCAGAAGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATAGCTCGGAAATTTATACCGGTATTCATGGGCACTGCTGTCAAAGACAAGGGGGTACAACCACTTTTGGATGGCATACTTAGTTATTTTCCATGTCCAATTGAAGTTACAAATTATGCTCTTGACCAATCTAAGAATGAAGAGAAGGTTGAGCTTACCGGAAGTCCTGATGCACCCCTTGTAGCATTGGCTTTCAAGTTGGAGCAAACACTGTCAGGACCGTTAACTTACCTAAGAATTTATGACGGCGTCATTCGAAAGGGTGGTTCAATTTTTAATGTTAACACGGGTAAGAATATTAAGATTTCTCGTCTCTGTCAAATGCATTCTCATGAAAAAATGCATGACATTCAAGAGGCCCATGCTGGTCAAATAGTTGCAGTATTTGGGCTGGAATGTGCAGCGGGAGATACTTTTACTGATGGGTTAGTTAAGTACACAATGACTTCTATGGCTATTTCTAAACCCGAGATTATCATGCTTGTTGAGTTGAAAGTACCCACAGAATTTCAAGGAGCTGTCACTGCCGATCTGAACAAGAGAAAAGGTGTGATTCTTGGCAATGATCAAGATGGAGATGATTCTATCATTAGAGCTCATGTCCCTCTTAACAATATCTTTCGGTATTCTCCAGTTCTTAGTTCGATGACACAGGGAAAGGGTAAACTCACAATGGAATATAAGAAACCCAATGCAAGGGAAATAAGGCAGCTGAATGATTATTATTGGATTCATAGTTCTTCTACGTAA 1629 0.4346 MARPQRLLYALCSSSATTAGSLIGGTFHPRYFSAGSVAHATAAANIDKDPWWKESMKKVRNIGILAPMDSEKTTLAEQILLYTDQIHKMHEVRGKGGCGATMDSMDLERKNGITIKSASTYCNWKGSKINIIEHVDFTTEVERALRVVDGAILVLCSFGGVRSHSITVDCQMRKNEVPRITFINQLDQMGADPWKVLNQIRSHFPRRTAAIQVPIGLENEFKGLVDLVKLKAYYFEGSHGKEKVPSNMETLVADKRRELIRTVSEVDKILAGAFLSDETISEADLEGAIRRATIARKFIPVFMGTAVKDKGVQPLLDGILSYFPCPIEVTNYALDQSKNEEKVELTGSPDAPLVALAFKLEQTLSGPLTYLRIYDGVIRKGGSIFNVNTGKNIKISRLCQMHSHEKMHDIQEAHAGQIVAVFGLECAAGDTFTDGLVKYTMTSMAISKPEIIMLVELKVPTEFQGAVTADLNKRKGVILGNDQDGDDSIIRAHVPLNNIFRYSPVLSSMTQGKGKLTMEYKKPNAREIRQLNDYYWIHSSST 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05201 542 SMART EFG_C_a 450 534 IPR000640 -
Vifa1g05201 542 Gene3D - 48 329 IPR027417 -
Vifa1g05201 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 324 IPR027417 -
Vifa1g05201 542 Gene3D Translation factors 334 455 - -
Vifa1g05201 542 FunFam Ribosome-releasing factor 2, mitochondrial 53 334 - -
Vifa1g05201 542 SUPERFAMILY Translation proteins 291 443 IPR009000 -
Vifa1g05201 542 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 PRINTS GTP-binding elongation factor signature 143 154 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 327 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 450 524 - -
Vifa1g05201 542 Gene3D - 456 521 - -
Vifa1g05201 542 CDD mtEFG1_II_like 353 434 - -
Vifa1g05201 542 Pfam Elongation factor Tu GTP binding domain 57 324 IPR000795 GO:0003924|GO:0005525
Vifa1g05201 542 SUPERFAMILY EF-G C-terminal domain-like 450 521 IPR035647 -
Vifa1g05201 542 Pfam Elongation factor Tu domain 2 368 433 IPR004161 GO:0005525
Vifa1g05201 542 FunFam Elongation factor G 452 521 - -
Vifa1g05201 542 FunFam Elongation factor G, mitochondrial 335 449 - -
Vifa1g05201 542 Pfam Elongation factor G C-terminus 452 521 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05201 Vifa-Chr1 811825529 811827157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05201 57 191 Eukaryotic Initiation Factors Gene Family AT3G22980 32.653 1.11e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05201 K02355 - gmx:100783315 618.231