Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05198 ATGGAATTGGAAGGTGATCATCAAAGTAATGGAATCCGAAGCAGACCAAATTTCCCTCTTCAGCTTTTAGAAAAAAACAACATCATCGAACATGTCTCCGAAGAACAACCTTGTTCAACCACCGCAAACGACGGTTCTTCTACTGCCATCTTATCATCAGACCAACAGAAAAAGCCTCCGCCGAAACGGGCCTCGACGAAAGATCGGCACACGAAGGTCGACGGACGAGGCCGCCGGATCCGTATGCCGGCAGCCTGTGCTGCAAGAGTTTTTCAGTTGACGCGTGAACTGGGACACAAATCCGACGGCGAGACGATCGAGTGGCTACTTCAACAGGCTGAGCCGTCGGTTATAGCAGCCACCGGAACAGGAACAATCCCTGCGAATTTCACGTCGCTTAACATCTCTCTTAGAAGCTCTGGTTCAACTATGTCCGCTCCGTCGCACTATTTTAGAGGTAATTACTTCAACCCTAGTACGTTTCCAACTGCTGCGGCGGCGGCTCAGCTTCGAAACCGGGCTGAATGGGATAGAAATATGAATATGAATGTTGTGGCTGAAGATTCTAGAAGAAGTAACAGTATGTTAGAGAATCCTTCTTCTTTGTCAGCGATTTTGAATTTTAACAACGTGCAAAATGCTATACTTCAGACTAAGCAAGAACTCCGGGATGAAAACATTGCTTCCGCGGCCGGAGGATTTGAATTGTTGGGTTCTGATTCTGATGGAAGCATAGGTAGAAAAAGAAGGTCATCAGAACAAGAATTGTTATCACAAAATATGGGAAGCTATTTATTACAATCAAATGTGGGGTCACTTCCTTCAAGCCATGCTTCCAACACTGCAGCGTTTTGGATGGTAACTGGCAATGGGAACCAAACTGTTAATGGTGGTGGTGGTGGTGGTAATGGAAATGATCCAATTTGGGCAATTCCTTCTGTTGGAAACAATGGCTTATATAGAGGAGCTATGTCAATGTCTTCTCCTAATGGAATTCATTTCATGAATTTCGCTTCTCCAATGAATCTCATGCCTGGAAGTCAATTTGGTTCCGGAATAATCGGCGGCGGTGGTGGTGGTGGTGGAGGAAGCGGTGGTATTCTGGGCGAAAGCAATTTAAATATGCTTTCAGCCATGAATGCCTATAGACAGATTTCTGCAAATGGTATGTCTGAGTCGTCCGGACATCACCAAGGGGGTGGTGGAGGAGGCGGAGACGACGACGGACATGACTCAAGCAGTCAACACTCTTAA 1254 0.4625 MELEGDHQSNGIRSRPNFPLQLLEKNNIIEHVSEEQPCSTTANDGSSTAILSSDQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFPTAAAAAQLRNRAEWDRNMNMNVVAEDSRRSNSMLENPSSLSAILNFNNVQNAILQTKQELRDENIASAAGGFELLGSDSDGSIGRKRRSSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQTVNGGGGGGNGNDPIWAIPSVGNNGLYRGAMSMSSPNGIHFMNFASPMNLMPGSQFGSGIIGGGGGGGGGSGGILGESNLNMLSAMNAYRQISANGMSESSGHHQGGGGGGGDDDGHDSSSQHS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05198 417 MobiDBLite consensus disorder prediction 60 78 - -
Vifa1g05198 417 Pfam TCP family transcription factor 65 202 IPR017887 -
Vifa1g05198 417 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Vifa1g05198 417 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 376 IPR005333 GO:0003700
Vifa1g05198 417 MobiDBLite consensus disorder prediction 34 78 - -
Vifa1g05198 417 MobiDBLite consensus disorder prediction 34 59 - -
Vifa1g05198 417 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05198 Vifa-Chr1 811236066 811237319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05198 57 411 TCP Transcription Factor Family AT3G47620 41.990 2.07e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g05198 TCP 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05198 - - gmx:100809966 496.508