Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05190 ATGGGCCGTGGAAGAATAAGTATGGAACTCATTCAAAATGAGAAGGCAAGAAAGACAACATTTCAAAAGAGAAAGAATGGATTGATGAAAAAAGTGAATGAATTTGCTATTCTTTGTGATGTTGATGTTTGTGTAATTCTCTATGCTCCAAACTTTGAAGGTCCAGGATATGTTGGACCTGAAACATGGCCTAAAGACCCAAAAGAGGTACAAAGAATTCTTGAAAAGTACTATAACACGACGAGCGATAGGCGTCCTAAGATCTACGATGTTCATGAATATTACAAAGAGAGAGTGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGGAAAGATAGGTTAAAGCTCATGTATCCAACTTGGGATGAGTCTTTCAATTCTATTGGAGGGGAAGACGTGAGGATGCTTGCTAGAATATTGGATGCTAGGCTTGATGCTTGTAATCTAAAGATGAATATCCTAAAAGGAGATTTTAAGGAAAAAGCAATAGTTCAAGAACCACACAAGTTTGATCAACTTATGAACACTCCTTACATTGCTTCAAATTCAAGTAACTACTACCATCTCATGCAAAACAGCATGTCTCAACCACAAATTTACCCTCCATTGATGAATATTAATGATAAAAACCTAAACTCCTTAGGGTTTTTTCCATTTCAAATCGGGCAAAGCTCGCAATCTTCTTCTATGCTTACCAATGCACAAGGTTGTTCGTATCAGGTCGAACCTATGGAGGGTAGATATATGCAACCTTATCCATATAAGAAAATGGATGCTAATTGTATGAATTGGGGGAATCAAGTTAGTGCTAATGTTACTTATGATCCAAGTATCGGCACGATGAAGAATAATGAAGCTGAAAATAATGAAAACTTGTTACCATACTATTACAATGGAAATCCAATGCAATCATATCCTATTGCTATGCATACTCTTCCTTATCAGAAACATCCAAACCTACCTCATGGATATCAACTTAATGGATACTATGATATAGATTTTCTTCAAGGTCATCATATGTTTAACTACATGGATGGAAGGAAGTAG 1047 0.3591 MGRGRISMELIQNEKARKTTFQKRKNGLMKKVNEFAILCDVDVCVILYAPNFEGPGYVGPETWPKDPKEVQRILEKYYNTTSDRRPKIYDVHEYYKERVKKVEFEISKVRKDRLKLMYPTWDESFNSIGGEDVRMLARILDARLDACNLKMNILKGDFKEKAIVQEPHKFDQLMNTPYIASNSSNYYHLMQNSMSQPQIYPPLMNINDKNLNSLGFFPFQIGQSSQSSSMLTNAQGCSYQVEPMEGRYMQPYPYKKMDANCMNWGNQVSANVTYDPSIGTMKNNEAENNENLLPYYYNGNPMQSYPIAMHTLPYQKHPNLPHGYQLNGYYDIDFLQGHHMFNYMDGRK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05190 348 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa1g05190 348 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vifa1g05190 348 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g05190 348 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vifa1g05190 348 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05190 Vifa-Chr1 809746101 809747147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05190 1 244 Type I MADS-box Gene Family AT5G55690 33.468 6.04e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g05190 SRF-TF 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05190 - - tpra:123913303 449.899