Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05189 ATGCAATTACAGCTTTTCGACAAGAAGGATCATGGTCATATTAATATTGGCCCATACAAGAAAGTTCAACAGTCGATTGAGAGCACAAAAAATGCAATGAAGCCACATTTTGAAGTTCATAATGTCCTCTATAAGCTCAAAATGAGGCTTTCACTTTATCGATTCCGCTGGGGACTGGGAAATCAAACAGTTATTGCTGCTGAGTATCACGCGTTAATTTTAGGAATGAAACAAGCCATAATTAAAGGATATAAGAACATCATTGCTGAAGGAGACTCGGGACGTGTTATCAATCAGGTTAAGGGTTTTGAGTACGCACATGAGCCTATAAGGAGGTTATGGGTTGCGGTTTTGGAGTTGAAGCACAGCTTTCACGCATTCCACATCCATCTAATTCCTAGGGGAACCACGTTTGAAGTAGGAGCGACGGAGATGGCTGAGGAAGTGACGGCAAGTGACGGTGACGGCAAGTGA 474 0.4262 MQLQLFDKKDHGHINIGPYKKVQQSIESTKNAMKPHFEVHNVLYKLKMRLSLYRFRWGLGNQTVIAAEYHALILGMKQAIIKGYKNIIAEGDSGRVINQVKGFEYAHEPIRRLWVAVLELKHSFHAFHIHLIPRGTTFEVGATEMAEEVTASDGDGK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05189 157 SUPERFAMILY Ribonuclease H-like 54 133 IPR012337 -
Vifa1g05189 157 Gene3D - 27 153 IPR036397 GO:0003676
Vifa1g05189 157 Pfam Reverse transcriptase-like 59 135 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05189 Vifa-Chr1 809448059 809449475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05189 1 54 Glutathione S-transferase Gene Family AT5G41240 49.091 5.94e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05189 - K00799 psat:127105649 104.375