Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05183 ATGAACTGCGACTGCGAGCATAGACGAGAAAGTAGGGAAAGGTGGTTGGAGAGGAATCTAAAGCCTAATGATATGGCTTCTGTTGCAGTTGCTACTGCAACTTCTTTAGTAGCCTCTCATTGCCTTGAGATTGCAGAATATATGGGAGTTGAACATGAACAGATTGCAACTGCAGTCGACTCGGCTATTAATGCGAAAACAAATGGAGATATTATGACTCTTACAGCTGGAGCAGCAACGACCTTGCGTGGAGCTGCAACTCTAAAATCGCGTCTAAAGAGGGGGATTGGAGCTACTATGATTCCCCCGATTGAGGATAAGTGTGGCAAAGCCAAAAAAGCAAACATCTTGACAGCACTGGATTTTGTCTTTCAAGGAGCTGTACTTCTCAAACGTACAAGAAAATGTAATTGCTTGAAGAACAAATATCTATATTCATTAACAAATCACGTTTTCAGTGTTGAAAATGGTATTCGTGTCGTGAAGTTTTATGCACCATGGTGCCACTTCTGTCAGCAGTACAATAGTCAGATTCAGTCAAATCTGAAAACAGTTAATGAGGCAAATAAACAAATGGAAACAGAGAAATCAAGTATTGTTGAGAACCTTAGCAGTGTAAGAGGCCACAATGGTAGTGTAGGTTCTCTCGGTTGGTGGGACTTATTTATTAACTTCAGTATTGTAGAGTGCTTTGCGTTTCTTATATGTGCAAATTGA 717 0.4045 MNCDCEHRRESRERWLERNLKPNDMASVAVATATSLVASHCLEIAEYMGVEHEQIATAVDSAINAKTNGDIMTLTAGAATTLRGAATLKSRLKRGIGATMIPPIEDKCGKAKKANILTALDFVFQGAVLLKRTRKCNCLKNKYLYSLTNHVFSVENGIRVVKFYAPWCHFCQQYNSQIQSNLKTVNEANKQMETEKSSIVENLSSVRGHNGSVGSLGWWDLFINFSIVECFAFLICAN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05183 238 Pfam Auxin canalisation 24 105 IPR008546 -
Vifa1g05183 238 Gene3D Glutaredoxin 138 211 - -
Vifa1g05183 238 SUPERFAMILY Thioredoxin-like 147 186 IPR036249 -
Vifa1g05183 238 Coils Coil 175 195 - -
Vifa1g05183 238 PANTHER EXPRESSED PROTEIN 21 137 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05183 Vifa-Chr1 807873778 807876556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05183 210 236 C3H Transcription Factor Family AT1G73950 74.074 1.11e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05183 - - psat:127084614 166.777