LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05178	ATGAATAATTCTGGAAAAGAAAAAGCATTGAATCTTAACACTAATGACAAGCTTTATCTCCAATCTAATGCCTTCAAAGCTCCACCATCTCCCAAACAACCTTTCTTCATTGGTGTTGCTGGTGGAACTGCATCTGGGAAAACAACTGTATGCAACTTGATAAACAGTCAGCTTCATGATCAACGTATTGTCCTGATTAATCAAGACTCGTTTTACCACTCATTGAGTGATGATATACTACAAAAAGTTAATGACTATAACTTTGATCATCCTGATGCATTTGATATAGAGCTTATGCTTTCTAGTATGGAGAAATTAAAACATGGACAAACTGCTTCCATACCGAATTATAACATCAATACTCGTAAGAGAATCGAACCTCCACGCCAGGTTCACCCAGCAGATATCGTAGTTTTAGAAGGAATATTAGTGCTTCACGATTCTCGTGTTCGCGATCTTTTGAACATGAAGATCTTTGTTGACGAAGATTCTGATATTCGCCTTACGCGAAGGATTCAACGCCTCACCATTGAACATGGGAGAAACATTCAAAATGTTCTAGACCAATATTGCAGATTTGTTAAACCTAGTTTTGAAGATTTTGTTCTTCCAACAAAAAAATTTGCTGATATTATCATACCTGGTGGAGGAGATAATGATGTTGCTATTGATTTGATTATTCAAAATATTCGTACAAAGCTTGGTCAACATGATTTGTGTAAAATATATCCTAATATTTTTGTCATTTTTTCTACTTTTCAGATAAAGGGAATGCATACTCTAATCCGTGATGTTGGAACTACAAAACATGATTTCGTATTTTATTCGGATCGTCTTATTAGATTGGTTGTTGAACATGGACTTGGTCACCTTCCTTTTACAGAAAAACAAGTCACAACACCAACAGGATCTGTATACTCTGGTGTGATTTTTTGTAGCAGATTATGCGGAGTATCCGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTGAGAGCATGTTGTAAAGGAATCAAAATTGGTAAAATACTTATTCTTGGACAAGGCACAGATGGAAGACAGTTAATCTATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTGTTGCTACTTGATCCTGTTCTAGCTACAGGAAGTTCTGCAGTGAAAGCCATCTCTCTACTTCTGAAGAAAGGTGTATTAGAATCAAATATCATCTTTCTAAATTTAATAGCAGCACCACAAGGAATAAATGCAGTTTGTGAGAGATTTCCAATGATGAAACTTGTAACATCAGAGATTGATGCAACACTAAATGAGAGTTCTCGTGTGATCCCTGGATTAGGCGAGTTTGGTGACCGTTACTTCGCCACAGATGATTAG	1365	0.3641	MNNSGKEKALNLNTNDKLYLQSNAFKAPPSPKQPFFIGVAGGTASGKTTVCNLINSQLHDQRIVLINQDSFYHSLSDDILQKVNDYNFDHPDAFDIELMLSSMEKLKHGQTASIPNYNINTRKRIEPPRQVHPADIVVLEGILVLHDSRVRDLLNMKIFVDEDSDIRLTRRIQRLTIEHGRNIQNVLDQYCRFVKPSFEDFVLPTKKFADIIIPGGGDNDVAIDLIIQNIRTKLGQHDLCKIYPNIFVIFSTFQIKGMHTLIRDVGTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILILGQGTDGRQLIYEKLPSDIASRHVLLLDPVLATGSSAVKAISLLLKKGVLESNIIFLNLIAAPQGINAVCERFPMMKLVTSEIDATLNESSRVIPGLGEFGDRYFATDD	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g05178	454	SUPERFAMILY	PRTase-like	236	452	IPR029057	-
	Vifa1g05178	454	FunFam	Uridine kinase	30	236	-	-
	Vifa1g05178	454	NCBIfam	uridine kinase	35	233	IPR000764	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	64	75	-	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	109	124	-	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	179	190	-	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	165	175	-	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	34	51	-	-
	Vifa1g05178	454	PRINTS	Uridine kinase signature	201	214	-	-
	Vifa1g05178	454	Gene3D	-	30	236	IPR027417	-
	Vifa1g05178	454	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	29	226	IPR027417	-
	Vifa1g05178	454	Pfam	Uracil phosphoribosyltransferase	251	452	-	-
	Vifa1g05178	454	CDD	PRTases_typeI	315	425	IPR000836	-
	Vifa1g05178	454	PANTHER	URIDINE KINASE	27	363	-	-
	Vifa1g05178	454	Gene3D	-	237	452	IPR029057	-
	Vifa1g05178	454	CDD	UMPK	36	233	IPR000764	-
	Vifa1g05178	454	Pfam	Phosphoribulokinase / Uridine kinase family	36	222	IPR006083	GO:0005524\|GO:0016301
	Vifa1g05178	454	FunFam	Uridine kinase	237	452	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05178	Vifa-Chr1	807415681	807420366	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05178	33	454	PRT Gene Family	AT1G55810	72.577	0.0	648

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05178	K00876		-	mof:131168055	682.559