Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05176 ATGTGGTACTTCGTCAAAAGTCTAGTTACATCGCAGGGGATAGAGCAGAACCTTAATGAAAACTGCATCACTGCACTTTCCTATCTAGACTTGTGCTTCTTTCCACAATATGCATTGAAATATATATCAACACCGTTTTTTATCTTGAATTCTGCTTATGATGTATTCCGGGTTATGGGTGAACAAGTCGACATGCTTGCAGCTTTGAAACCAGGTTTTAGGCTCAGCATGCTTGCAGCTTTGAAACAGTTCTACTTTTATTTGAACAGAGGGGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAATCGCAAGAAACATGGTTTGGAGACGATTCTCCTAGAATAAATAACAAGATTGATAAAGATGAAGAAACAAGCAGGAAATTAGCTAAAGTAGTAAATCTCACAGGAAATAATCTAACAACATTCATTCCAAACAATATTGGTCATATGCAGAGCTTATAA 474 0.365 MWYFVKSLVTSQGIEQNLNENCITALSYLDLCFFPQYALKYISTPFFILNSAYDVFRVMGEQVDMLAALKPGFRLSMLAALKQFYFYLNRGGMFINSCFAHCQSESQETWFGDDSPRINNKIDKDEETSRKLAKVVNLTGNNLTTFIPNNIGHMQSL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05176 157 PANTHER NOTUM-RELATED 3 58 IPR004963 GO:0016787
Vifa1g05176 157 Pfam Pectinacetylesterase 4 58 IPR004963 GO:0016787
Vifa1g05176 157 Pfam Pectinacetylesterase 72 121 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05176 Vifa-Chr1 807355278 807356278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05176 1 121 Carbohydrate Esterase AT5G23870 47.917 3.97e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05176 K19882 - gmx:100802358 161.77