Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05171 ATGTGGAGCCTTGATTTGATTAGGGTTTGTATTTTGTTGGCTTTTGCGTCTCTCATTTCTTCTCTCGAACCCCAACTCGGATCAACCCGCGTCGTCTTTCAGACTAATTATGGAGACATTGAATTTGGTTTCTATCCAACTGTTGCACCCAAAACTGTTGACCATATTTTTAGGCTTGTGAGACTTGGAGGCTATAACACCAATCACTTCTTTCGGGTGGATAAGGGATTTGTAGCCCAAGTAGCCGATGTTGCAAATGGAAGATCTGCTCCCATGAACGAGGAACAAAGAAGAGTAGCTGAAAAGACTGTTGTTGGTGAATTTAGTGAGGTCAAACATGTTCGCGGTATTCTTTCCATGGGAAGGCATGATGATCCAGATAGTGGTGGATCCTCTTTTTCAATGTTACTTGGAAATTCTCCTCATCTTGATGGGAAGTATGCAATATTTGGAAAAGTTACAAAAGGCGACGATACATTGGCAAAGCTTGAGCAACTACCTACTCGTACAGAGGGAATATTTGTAATGCCAACGGAGCGCATCACCATCCTCTCATCATATTACTATGATACGGAGACAGAAAATTGTGAGCAAGACAGATCAATTTTGAAGCTCAGGTTAGCTGCATCGGCCGTTGAAGTTGAAAGACAGAGAATGAGATGCTTCCCCTAA 672 0.4241 MWSLDLIRVCILLAFASLISSLEPQLGSTRVVFQTNYGDIEFGFYPTVAPKTVDHIFRLVRLGGYNTNHFFRVDKGFVAQVADVANGRSAPMNEEQRRVAEKTVVGEFSEVKHVRGILSMGRHDDPDSGGSSFSMLLGNSPHLDGKYAIFGKVTKGDDTLAKLEQLPTRTEGIFVMPTERITILSSYYYDTETENCEQDRSILKLRLAASAVEVERQRMRCFP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05171 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 9 223 IPR044233 -
Vifa1g05171 223 SUPERFAMILY Cyclophilin-like 25 190 IPR029000 -
Vifa1g05171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Vifa1g05171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 IPR002130 GO:0000413|GO:0003755
Vifa1g05171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Vifa1g05171 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 IPR002130 GO:0000413|GO:0003755
Vifa1g05171 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 32 188 IPR002130 GO:0000413|GO:0003755
Vifa1g05171 223 CDD cyclophilin 32 185 - -
Vifa1g05171 223 Gene3D - 19 196 IPR029000 -
Vifa1g05171 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 185 IPR002130 GO:0000413|GO:0003755
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05171 31 189 U-box Gene Family AT5G67530 28.144 4.32e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05171 - - gmx:100819238 379.022