Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05163 ATGCATGAGATGGCTTTCTTCCAAGCAAATTTCATGTTACAAACTCCTCATCCCCATGATGATCATCATCATCACCAACAACCTTCACTCAACTCAATTCTACCTCAAGAATATCATGGGGGACCATCATTTCTAGGGAAGAGATCTATGTCATTTTCATCCGGAATCGAACTCGGAGAAGAAGCCAATATAGCTGAGGAAGATTTATCAGATGATGGATCACAAGCCGGTGAGAAGAAAAGGAGGCTCAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGTAACAAGCTAGAGCCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTAACTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCAAGATGGAAGACAAAGCAGCTGGAAAAAGACTATGATGTCCTTAAAAGACAATATGATGCTGTTAAATTAGATAATGATGCACTTCAAGCTCAAAACCAAAAACTTCAAGCAGAGATAATGGCATTGAAGAGTAGAGAACCAACTGAATCAATCAACCTAAATAAAGAAACAGAAGGATCAAGCAGCAATAGAAGTGAAAACAGTTCAGATATCAAGTTAGATATCTCAAGAACACAAGCTAGTGATAGTCCTCTATCAACACACCATACAACAACAAGCAGAACCTTCTTTCCATGTCCCTCAACTAGGCCTCCAGGAGAAATTGCTCAATTTTTTCAAACATCTTCGAGGCCTGAGCAACTTCAATGCCAAAAGATTGATCAATTGGTCAAAGAAGAAAGCTTAAGCAACATGTTTTGTAGCATGGATGATCAAACTGGATTTTGGCCATGGTTGGAGCAACAACAGTTCAATTGA 864 0.3935 MHEMAFFQANFMLQTPHPHDDHHHHQQPSLNSILPQEYHGGPSFLGKRSMSFSSGIELGEEANIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQAQNQKLQAEIMALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRTQASDSPLSTHHTTTSRTFFPCPSTRPPGEIAQFFQTSSRPEQLQCQKIDQLVKEESLSNMFCSMDDQTGFWPWLEQQQFN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05163 287 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Vifa1g05163 287 MobiDBLite consensus disorder prediction 182 228 - -
Vifa1g05163 287 MobiDBLite consensus disorder prediction 175 229 - -
Vifa1g05163 287 MobiDBLite consensus disorder prediction 14 38 - -
Vifa1g05163 287 FunFam Homeobox-leucine zipper protein ATHB-13 71 138 - -
Vifa1g05163 287 Coils Coil 126 174 - -
Vifa1g05163 287 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Vifa1g05163 287 CDD homeodomain 79 135 IPR001356 GO:0003677
Vifa1g05163 287 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Vifa1g05163 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 255 IPR045224 GO:0003700
Vifa1g05163 287 SUPERFAMILY Homeodomain-like 72 136 IPR009057 -
Vifa1g05163 287 Gene3D - 71 140 - -
Vifa1g05163 287 SMART HOX_1 77 138 IPR001356 GO:0003677
Vifa1g05163 287 MobiDBLite consensus disorder prediction 63 84 - -
Vifa1g05163 287 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05163 Vifa-Chr1 802717200 802719034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05163 4 287 Homeobox Transcription Factor Family AT1G69780 63.667 1.37e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g05163 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05163 K09338 - gmx:100808033 460.299