Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05151 ATGAGTTCACTTTTATGCTTCTTCTTTCTTTTTGCTCTTTCTCTTCTAACTTCAAATTTTGTTTCATCCTCTGCAGTTCAAGACCCTGAACTAGTTGTACAAGATGTGCAAAGGAGCATCAATGCCTCTAGGAGAAACTTGGGCTATTTATCATGTGGAACAGGCAACCCAATTGATGATTGTTGGAGATGTGATCCAAATTGGCAAAACAACAGACAAAGACTAGCAGATTGTGCAATTGGATTTGGCAAAGACGCAATAGGTGGAAAAAATGGCAAAATCTACATCGTTACCGATTCAGGTGATGATGATCCAGTAAACCCTAAACCCGGAACCCTAAGATATGCCACAATCCAAGACGAACCTTTATGGATAATTTTCCAAAGAGACATGGTAATCACATTAAAACAAGAACTCTTAGTAAACTCATACAAGACAATTGATGGAAGAGGCGCAAATGTTCACATAGCAAATGGTGGATGTGTGACAATACATTATGTTAACAACGTTATAATACATGGTATTAATGTTCATGATTGCAAGCCATTAGGGAACACTAATATAAGGGATTCACCAGAACATAGTGGCTTTTGGACAGTTTCTGATGGTGATGGAATTTCTGTGTTTAATTCACAACATGTTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGACTTATTGATGTTATTCATGGATCAACAGCTATTACTATTTCAAATAATTATATGACTCATCATGATAAGGTTATGCTTTTGGGACATAGTGATTCTTATACACAAGATAAGGATATGCAAGTCACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTTCATGTGGTAAACAATGATTACACACATTGGGAAATGTATGCAATTGGAGGAAGTGCAAACCCTACAATCAACAGCCAAGGAAACAGATTTCTTGCACCAAACAACAGATTTAGTAAAGAAGTAACAAAACATGAAGATGCTTCAGAAAGTGAATACAATAGTTGGAATTGGAGATCAGAAGGAGATTTGTTCTTAAATGGAGCATTCTTTAGACAAACTGGTGCTGCTGCTTCTTCTTCTATCTATGCTAGGGCTTCAAGCCTTAGTGCTAGACCAGCTTCTCTTGTTGGTTCAATTACTTCAACTTCTGGCGTGCTTAATTGTAAGAAGGGCGCGCCTTGCTGA 1218 0.3736 MSSLLCFFFLFALSLLTSNFVSSSAVQDPELVVQDVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWQNNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPKPGTLRYATIQDEPLWIIFQRDMVITLKQELLVNSYKTIDGRGANVHIANGGCVTIHYVNNVIIHGINVHDCKPLGNTNIRDSPEHSGFWTVSDGDGISVFNSQHVWIDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNNRFSKEVTKHEDASESEYNSWNWRSEGDLFLNGAFFRQTGAAASSSIYARASSLSARPASLVGSITSTSGVLNCKKGAPC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05151 405 Pfam Pectate lyase 137 321 IPR002022 -
Vifa1g05151 405 SMART amb_all 130 327 IPR002022 -
Vifa1g05151 405 SUPERFAMILY Pectin lyase-like 56 396 IPR011050 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vifa1g05151 405 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vifa1g05151 405 PANTHER PECTATE LYASE 18-RELATED 22 403 IPR045032 GO:0030570
Vifa1g05151 405 Gene3D - 55 398 IPR012334 -
Vifa1g05151 405 FunFam Pectate lyase 55 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05151 Vifa-Chr1 801426613 801429635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05151 2 405 Polysaccharide Lyase AT5G63180 72.236 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05151 K01728 - gmx:100794814 737.258