Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05150 ATGCAAGATATGAAGAAGCTGCAGAATCAGAAGCAGAAGCAGCTTGTGACTGAAGAATCGAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATATTGAGAGATCAAATTGGAATCCATGGAACTGAAAATTGGGCAATAATTGCTTCTAAGTTCAAGGATAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGTTGGTCACCAGATGAAGATATGCTCTTATGTGAGGCACAAAAAATATTTGGCAATAGATGGACAGAAATAGCAAAGGTGGTTTCAGGAAGAACCGATAACGCTGTCAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCTAAATATGAAGCCTTAGCAAAAGAGAACAACATTTCGTACACGAATTCGAATAACAAAAGGGTTATTTTCCGAGACGCGGCATCAGATTCTGCAGTAGATTATAAGAAAATGAGGAGGTCACATATCCCTGATGATGCAGAAAAGATCAACTTTGCAGACAGATCACATAAACAACACGAAACTTCAAGAGCACCATTGGCAGTTTTACCTCAAAACTCTCGTCATATCAACAACTTGCCAGACCAGAATGATGTCTGCAATGTGAAGTTCGGCGGCTTTGCTCCAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGATCCAAAGATAAACGCGTTGATGCAACAAGCCGAGCTTCTAACATCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGATTCTTCAGGAGTTTATGAACAGAAACAAAGAGTCAGATATTCCTGGATATAAAATTCCAGATTTACAGTTTGTAGATCTTAAAGACTTACTGGAAGACTTAAAGAATAGTAGTGAGGAAATTCAACCATGTTGGAGGTACTTGGAATTATATGAAGACTCTCCAAGCAGTTCCGAAGGATCAACTATTCTGCCTCATTCTGCTGCCGAGAATTTGGAACACTCACTACATCAAGATAATGGAACTGAACTGAATTCAATACAAATTGGAGATCAAAAGGGAGATGGAGGATGTGATCAAGTGGTTCTTTCTAGTGCAACTATGGTCGATCAAGATATATTCACATCTTGTGAGGAACAGATAAACAATGATGGCATTGGCATTGTTTCATCCCTATCAACTGCAGAGTTTAGTTCTCCTCTTCAAGTTACCCCTATGTTCAGATCCTTAACTGCAGCAATTCCAAGTCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGATTCTCCATCCCTCAACCCAATCGCCAACCCCTCGCAACCGCCACTCTGCAAAAGAGCCCTCCTACAAAGTTAA 1404 0.3967 MQDMKKLQNQKQKQLVTEESKKKERHIVTWTQEEDDILRDQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPDEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNNKRVIFRDAASDSAVDYKKMRRSHIPDDAEKINFADRSHKQHETSRAPLAVLPQNSRHINNLPDQNDVCNVKFGGFAPNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKILQEFMNRNKESDIPGYKIPDLQFVDLKDLLEDLKNSSEEIQPCWRYLELYEDSPSSSEGSTILPHSAAENLEHSLHQDNGTELNSIQIGDQKGDGGCDQVVLSSATMVDQDIFTSCEEQINNDGIGIVSSLSTAEFSSPLQVTPMFRSLTAAIPSPQFSESERNFLMKTLGMDSPSLNPIANPSQPPLCKRALLQS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05150 467 Gene3D - 17 78 - -
Vifa1g05150 467 SMART sant 26 75 IPR001005 -
Vifa1g05150 467 SMART sant 78 126 IPR001005 -
Vifa1g05150 467 Gene3D - 80 150 - -
Vifa1g05150 467 SUPERFAMILY Homeodomain-like 26 120 IPR009057 -
Vifa1g05150 467 CDD SANT 29 73 IPR001005 -
Vifa1g05150 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 77 IPR017930 -
Vifa1g05150 467 FunFam Transcription factor MYB124 22 78 - -
Vifa1g05150 467 Pfam Myb-like DNA-binding domain 30 90 - -
Vifa1g05150 467 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vifa1g05150 467 ProSiteProfiles Myb-like domain profile. 30 73 IPR001005 -
Vifa1g05150 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Vifa1g05150 467 PANTHER MYB PROTEIN-RELATED 29 185 - -
Vifa1g05150 467 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05150 Vifa-Chr1 801416163 801420613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05150 15 317 MYB Transcription Factor Family AT2G02820 60.377 8.05e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g05150 Myb_DNA-bind_6 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05150 K09422 - gmx:100807667 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05150 1 801416163 801420613 Vifa1g05150 1 801416163 801420613 ECH