Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05137 ATGGGTAACTGTCTTGATTCTTCTGCTAAAGTTGATGCAGCTCAAAGTTCTAGATCCACTTCTGGAATTTCGAAAACTACTCCTTCTAGTTTGACAATTCCGTCATATAGCGATAAGAGCAATTCCTCTAGTCTGCTTCCGACTCCGAGGTCTGAGGGGGAAATATTGTCTTCTCCTAATCTTAAAGCCTTTACGTTTAATGAGTTAAAGAATGCTACGAGGAATTTTCGGCCTGATAGTCTTCTTGGTGAAGGCGGATTTGGTCATGTTTATAAGGGATGGATTGATGAACAGACTTATACGGCTGCGAAACCTGGATCGGGAATGGTTGTGGCTGTGAAAAGACTTAAGCCTGAAGGGTTTCAAGGTCATAAAGAGTGGTTGACTGAGGTTAACTATCTAGGACAACTGCATCATCCTAATCTAGTTAAATTAATTGGATACTGCTTGGAGGGAGACAACAGGCTTTTGGTATATGAGTTTATGCCTAAAGGGAGCTTAGAAAACCATTTGTTTAGAAGAGGACCACAACCACTGTCTTGGCCAGTGCGAATGAAAGTGGCTATTGGTGCTGCAAGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATTTACCGCGATTTCAAAGCTTCGAACATCCTGTTGGACGCGGAGTTTAATTCGAAACTATCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAAAACTCATGTATCTACTCAAGTTGTGGGTACTCAAGGATATGCCGCACCCGAATATGTTGCAACTGGTCGGCTGACGGCTAAAAGTGACGTATATAGCTTTGGAGTTGTTTTGCTCGAACTTTTATCAGGAAGACGCGCCGTGGACAAAACAATAGCTGGCGTGGACCAGAATCTAGTAGACTGGGCGAAACCATATTTAGGCGATAAACGAAGACTATTCCGAATCATGGATTCCAAATTAGAAGGCCAATATCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCTCTACAATGCCTTAACAGAGAAGCTAAAGCAAGGCCTCCAATGATAGATGTTTTAGCAACTCTTGAACAGATAGAAGCTCCTAAACAAGCAGCCCGGATTTCTCTATCGGAACAGCAGAGAGTTCATGCTCCCGTGAGAAGGTCTCCTGCACGAAACCGAACGCCATCAAATGTAACTCCTACTGCATCGCCACTGCCATCTGTTCGGCAATCTCCTCGGGCGCGTTAG 1233 0.442 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEQTYTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGDNRLLVYEFMPKGSLENHLFRRGPQPLSWPVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPPMIDVLATLEQIEAPKQAARISLSEQQRVHAPVRRSPARNRTPSNVTPTASPLPSVRQSPRAR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05137 410 FunFam Probable serine/threonine-protein kinase PBL8 162 375 - -
Vifa1g05137 410 SUPERFAMILY Protein kinase-like (PK-like) 46 356 IPR011009 -
Vifa1g05137 410 FunFam Serine/threonine-protein kinase BIK1 43 161 - -
Vifa1g05137 410 PANTHER OS01G0588500 PROTEIN-RELATED 34 360 - -
Vifa1g05137 410 MobiDBLite consensus disorder prediction 385 410 - -
Vifa1g05137 410 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
Vifa1g05137 410 MobiDBLite consensus disorder prediction 1 54 - -
Vifa1g05137 410 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Vifa1g05137 410 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Vifa1g05137 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vifa1g05137 410 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05137 410 MobiDBLite consensus disorder prediction 367 410 - -
Vifa1g05137 410 Gene3D Transferase(Phosphotransferase) domain 1 162 381 - -
Vifa1g05137 410 MobiDBLite consensus disorder prediction 9 54 - -
Vifa1g05137 410 CDD STKc_IRAK 82 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05137 Vifa-Chr1 800713835 800715830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05137 24 356 Glycoside Hydrolase AT3G07070 50.595 8.54e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g05137 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05137 - - gmx:100809778 729.169