Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05117 ATGGGGAAAGGAAAAAGTCCTGGGAAATGGATCAAGAGCTTCTTCTCAGGGAAGAAATCGTCGTCCAAGTCGTCTAGTTCGTCGAAGAATAATGATATTTTTAAATCCTTGAGTAACAAGGATAGTTTGGGGGCTTCTGAGTTAACTGTGTCTAATCCAATTCCAACTGTGGATTCTTTGCTAATATCACCGCCGATATCTGGAGCTAATGTTGCCAAAGAATTGTTTTTGGAAAAGGAAGTAGTTAATCAGTCATCATCACATGAGAGGGAAATTGTCTCAAAAGGAGGGGAAGAGACTCAGGCAGTATCGCTCGTTGCTAATTTTGCTTCTCAAGTTGATGTTGGGACAGTCAGGCTTACAGATGCTGCTATTAAACTTCAGGCTGCTTGTAGAGGCTATCAGGCTCGCGGGGAATTTCAAACACAAAAAGCTATTACACTGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGAGAATTGTTAAATTCCAAGCATTGGCTCGCGGTTACAATGTTAGGCGTTCTGATATTGGGCTTGAGGTCCTGAAAATTCGTAAGGATACTCAATGTTCAAAATCTATTGTGGCAGTTACATCCACGGAGGCAGAGAAGCTGCCCGATAATGTCTTTGTCCACAAGCTGCTGGCTTCATCGTCCCATGCATTTCCTCTATCTCTCAGTAGTGATCTTGGAGAACCTTACTTGGCTGGAAACTGGCTTGACCGATGGACTAGGTCACAGTTTTGGGCACCTCTTCCTAAATTGAAGAAGAAACCTGATTCAGCATCTGATGATAAAAATATCAGTTCTCAAACAGTTGAAAAGGGACAGGTTAAAAGGAATACTCGGAAATCTCCTACCGTTAAAGCCAATGATGGCTCAAGTTCAGGTTCTAACAAACAGAAACAAGGTCTAAAAAAGGATTCAAATCACTCATCGGTTTCTGTTCAGGAACACGAACACCCAAGGAAAGAAATTGAAAAAAGCAGTCTAAAAAAAACTCGCATGCAGAATGTTTCAGACAGATCTGAGATTGTTAATGAGAAAAGAAAGCACAGCTCTAGGGCAATTTCAGATCATACTGTTACTGATGTTTCAGAGCAAGGGCCAATTTCCTCTTCTGAGAAAATGAAAGTGATCACAGTGCCAAAGTCTGAAGAGTCTTATCCAGAGAAAGGTCTTGGGCAGAAAGGACTAGAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAACGGAGGTGCCAAAGAAGAAAAAGGTATTGGACAGAAAGCACTAGAAGAGAATAATGATAAGCCAAAGAAGAGCATTAATGGCGGTGCCGTAGATCAGAAAGGTCTTGGACAGAAAGCACTAGAAGATAACAACGATAAGCCCAAAAAGAGCTTAAGTGGTGGTTCAAAAGAAGAGAAAAGTCTTGGACAGAAAGCACTAGAAGAGAAAGGTCATAATGATCCCACTGCTGTTTTACAGACTAGTGTGAAGAATGTAGGAGATGCTAAAATAGGAGTTAGCGAAGCCCTAAATGGTGGTGACAAAATTGTCAGCAACAATTACCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGAAAATGAGTTACATAACACTCCAAGACTGCCGAGTTATATGGCTCCTACTGAGTCGGCAAAAGCTAGGCTAAGAGGACAAGGCTCACCTAGATTTGCTACTGATTTTTTAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCGTCCTCGTTTAACAGCAAGTCAGGTTCATTTTCCCCGAGAGCAGAAAAGCTTGTAAGTTTGAGCAGCAGAGGAGTTGCGAGGACTGATAAATCTCTGTCATCTTCAAGGGACGGCACTGATAAGTTGACACAACCTCAGTGGAGAAGGTGA 1926 0.4148 MGKGKSPGKWIKSFFSGKKSSSKSSSSSKNNDIFKSLSNKDSLGASELTVSNPIPTVDSLLISPPISGANVAKELFLEKEVVNQSSSHEREIVSKGGEETQAVSLVANFASQVDVGTVRLTDAAIKLQAACRGYQARGEFQTQKAITLLQALIRGHLVRRQAVSALYCVKRIVKFQALARGYNVRRSDIGLEVLKIRKDTQCSKSIVAVTSTEAEKLPDNVFVHKLLASSSHAFPLSLSSDLGEPYLAGNWLDRWTRSQFWAPLPKLKKKPDSASDDKNISSQTVEKGQVKRNTRKSPTVKANDGSSSGSNKQKQGLKKDSNHSSVSVQEHEHPRKEIEKSSLKKTRMQNVSDRSEIVNEKRKHSSRAISDHTVTDVSEQGPISSSEKMKVITVPKSEESYPEKGLGQKGLEENNDKPKKSLNGGAKEEKGIGQKALEENNDKPKKSINGGAVDQKGLGQKALEDNNDKPKKSLSGGSKEEKSLGQKALEEKGHNDPTAVLQTSVKNVGDAKIGVSEALNGGDKIVSNNYQRRASLPANFNDQENELHNTPRLPSYMAPTESAKARLRGQGSPRFATDFLDKNSLTRRHSLSSSFNSKSGSFSPRAEKLVSLSSRGVARTDKSLSSSRDGTDKLTQPQWRR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05117 641 MobiDBLite consensus disorder prediction 536 641 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 316 370 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 536 550 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 402 445 - -
Vifa1g05117 641 Gene3D - 117 167 - -
Vifa1g05117 641 Pfam IQ calmodulin-binding motif 170 186 IPR000048 GO:0005515
Vifa1g05117 641 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Vifa1g05117 641 Pfam IQ calmodulin-binding motif 121 137 IPR000048 GO:0005515
Vifa1g05117 641 Pfam Protein of unknown function (DUF4005) 543 615 IPR025064 -
Vifa1g05117 641 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Vifa1g05117 641 PANTHER IQ-DOMAIN 5-RELATED 1 597 - -
Vifa1g05117 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 184 IPR027417 -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 295 315 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 371 391 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 15 31 - -
Vifa1g05117 641 ProSiteProfiles IQ motif profile. 142 171 IPR000048 GO:0005515
Vifa1g05117 641 MobiDBLite consensus disorder prediction 616 641 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 266 503 - -
Vifa1g05117 641 SMART iq_5 119 141 IPR000048 GO:0005515
Vifa1g05117 641 SMART iq_5 167 189 IPR000048 GO:0005515
Vifa1g05117 641 SMART iq_5 142 163 IPR000048 GO:0005515
Vifa1g05117 641 MobiDBLite consensus disorder prediction 461 494 - -
Vifa1g05117 641 MobiDBLite consensus disorder prediction 586 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05117 Vifa-Chr1 797314120 797317001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05117 4 641 IQD Protein Family AT1G14380 31.982 3.15e-67 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05117 - - tpra:123907401 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05117 1 797314120 797317001 Vifa1g05117 1 797314120 797317001 ECH
Vifa1g05117 1 797314120 797317001 Vifa4g03331 4 1042980122 1042984745 ECH