Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05115 ATGAAGAATTTCTTGTTTTCTTTATACTTCTTGTTCCCTATAATCTTTACAATTATTCTCATCCTCCTCACTCCAATTCCAAGTGCACAATTAACACCAACAGAAACCAAAGTCCTTCTTCAAATTCAAACACTTCTTGAATACCCTCAACTTCTTCACAAATGGAAGAATTTCACCAACTTCTGCAACCTCTCTCCATCATCTTCCTTCACCATCATCTGCTCAAGGAATCATGTAACCGAATTAACAATCATTGGAAACAAAACAAAGCCAGTTTCAGCAAGATTCTCCACTGATTCTTTTTTCACTGTTTTAACAAAGCTTTCAAACATGAAGGTTCTGTCATTGGTTTCACTTGGTTTATGGGGTCCATTGCCTTTTAAAATCACTAGGTTTAAGTCTCTTGAAGTTTTCAACATTACATCAAATTTCATATATGGAGAAATTCCATTATCAGTTTCATCTTTGAAGAATCTCAAGAGCCTTGTTTTGGCTGATAATTTTTTCAATGGAAATGTACCTAATCTCACAAGATTAACCTCTCTTGAAGAGATTAATCTTAGTAACAACCGATTCGGCCCCGAGTTTCCTGCATTTTTGTTCTCTCTTCCTTTAATATACAGCCTAAACTTGGCTTCAAATCAGTTAACTGGTTCGATTTTCGGGAATATATCTTGTAGTCCTTCTTTGAAATTTCTTGATATCTCACACAATTTTCTACAAGGAAAACTGCCATGGTGCATTGATTCGAATTCGTTGAACCGAACAATATTTTATTCTGGCAACTGTCTGTCAACAAGAAATCTCAGTGATCAACATCCATCATCGTATTGCAATAAATCGACAGTGTTGAATGTTAAGCCGAGATTCGAGAGGCCGAATGAATCAAAGAAGCCACTAGGAGGAGTACTAATCGGTGTTATCGGAGGTTTCGTCGGAGCTGCAGTGCTTTTGATTCTAGTCTTTCTGTTCATTTTGAGAAAGTTCAATGCAGAAAAAGTTTCTGTCACTGCATGCTCAAGACCAAATATTTATGCAAGTAAAAGAAATGTTCCTCAGCTGATGAGGATAGCTTCAAATGGATTACCACCTTATAGGATTTTCAGAATAAAAGAAATTGAAGATGCAACCGATAACTTCGACTCGTCGAATCTATTAGGAGAAGGATCACAAGGAAAGCAATATAAAGGTAGACTCAAAGATGGTTCAATGGTCATGGTTAATCAGATAAGTTTGAGCAAAATCATTGATCAGAATTTGAAGGTGTTACCTTACTTAAGGCATAGGCATTTGGTGAGTGTTATAGGTCACTGTGCTATTAACAATGAGGATCATCCCAAAATGAAAAGCACAATGTTCATTGTATTTGAACACATCTCAAACATGTCATTGAAGATTCATCTTACAGATAGGATGAAAAGTGAGATGCTAAAGTGGCAACAAAGAATGACGATTATCATCGGCATTGCAAGAGGAATCGAGTTCTTACACACTGGAGTAACTCCTGGCATATATGGAAACAACATTAAGATTGAGAATATTATGTTGGACAATAGTCTTAATCCAAAAGTTAGTGGATATAGCATTCCATTTCCATCCAAGAAAGGTTCTGAGAGAAAGCATAAACAAAAGAATGGGCCTAATCATATTAGCAGTATAAATAGTGCAGAAAAAGAAGACATATATCAATTTGGTTTGATTCTACTTGAACTTATCACTGGAAAACTAGTTACATCTTCTATGGAAGTTGAGGTGCTGAAGTATGAGCTTGAGAGAGGTTTATGTGAAGTTGCATCACCGAACGCGTTGAGGAGTGCTATCGATCCTTCGCTCCATGGAACTTATGCACATGAATCATTGAAGACTGCAGTTCTGATCACCATCAACTGTCTCAGCAAGGTTTCTGGTGACCGGCCGTCTATAGAAGATATTCTCTGGAATCTGCAGTACTCCATGCAAGTTCAAGAAGGAAGGTCCAGCAAAGCCTCAACATGA 1995 0.3714 MKNFLFSLYFLFPIIFTIILILLTPIPSAQLTPTETKVLLQIQTLLEYPQLLHKWKNFTNFCNLSPSSSFTIICSRNHVTELTIIGNKTKPVSARFSTDSFFTVLTKLSNMKVLSLVSLGLWGPLPFKITRFKSLEVFNITSNFIYGEIPLSVSSLKNLKSLVLADNFFNGNVPNLTRLTSLEEINLSNNRFGPEFPAFLFSLPLIYSLNLASNQLTGSIFGNISCSPSLKFLDISHNFLQGKLPWCIDSNSLNRTIFYSGNCLSTRNLSDQHPSSYCNKSTVLNVKPRFERPNESKKPLGGVLIGVIGGFVGAAVLLILVFLFILRKFNAEKVSVTACSRPNIYASKRNVPQLMRIASNGLPPYRIFRIKEIEDATDNFDSSNLLGEGSQGKQYKGRLKDGSMVMVNQISLSKIIDQNLKVLPYLRHRHLVSVIGHCAINNEDHPKMKSTMFIVFEHISNMSLKIHLTDRMKSEMLKWQQRMTIIIGIARGIEFLHTGVTPGIYGNNIKIENIMLDNSLNPKVSGYSIPFPSKKGSERKHKQKNGPNHISSINSAEKEDIYQFGLILLELITGKLVTSSMEVEVLKYELERGLCEVASPNALRSAIDPSLHGTYAHESLKTAVLITINCLSKVSGDRPSIEDILWNLQYSMQVQEGRSSKAST 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05115 664 SUPERFAMILY Protein kinase-like (PK-like) 361 648 IPR011009 -
Vifa1g05115 664 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 459 664 - -
Vifa1g05115 664 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 32 200 - -
Vifa1g05115 664 Pfam Protein kinase domain 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05115 664 ProSiteProfiles Protein kinase domain profile. 380 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05115 664 Gene3D Ribonuclease Inhibitor 32 289 IPR032675 -
Vifa1g05115 664 MobiDBLite consensus disorder prediction 531 552 - -
Vifa1g05115 664 Gene3D Transferase(Phosphotransferase) domain 1 459 663 - -
Vifa1g05115 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 92 649 - -
Vifa1g05115 664 Gene3D Phosphorylase Kinase; domain 1 355 448 - -
Vifa1g05115 664 SUPERFAMILY L domain-like 32 264 - -
Vifa1g05115 664 Pfam Leucine Rich Repeat 229 249 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05115 Vifa-Chr1 797169607 797171845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05115 48 657 Miscellaneous Gene Families AT3G03770 38.621 2.10e-153 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa1g05115 Pkinase 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05115 - - mtr:11414733 920.613