Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05111 ATGTTGCATGCACAATCTTATACAACCACTGCCACCAACCCAATCTTACTCCCAAACCACTCTTTCATCACTCCCAAGAAACCCATTTCTCCGAGGCGCGTGGGTTCCACTTTCTGCTCCAATCTTCCGCAATCCTCTGTCACACGTAGCCACCCGGAGCTTGTACAACCGAAACCGAAACTGAAACCGTTTCCTTCTCCACCGCCTAAACGCCCTCAACCTCCTCCTTCACCAGCTGTAGAATTGCCACCGAGGGTTTATGTTGGTCATGCACTTTACAAAGGGAAAGCTGCACTCACTGTGTCTCCTAGACCTCCGGAATTCACTTCATTGGATTCAGGGGCGTTCAAGATATCCAAAGAAGGTTGCGTGCTGCTTCAGTTTGCTCCTTCGGCTGGTCCGCGCCTATATGATTGGAACAAAAAACAGGTATTTTCGCTATCAGTGGGAGAAATTGGAAATCTAATCAACCTTGGTGCAAAGGAGTCTTGTGAATTTTTCCATGAACCTTTTTTGGGAAAAAGTGACGAAGGTAAAGTGAGAAAAGTTTTGAAGGTGGAGCCACTTCACGACGGTTCTGGTCACATGTTTAACCTAAGTGTTCAAAACATGCCCGAGAACATAAATGAAAACATCTTCATCCCTGTCACAAAAGCCGAGTTTTCAGTGTTCAATTCACTTTTCAATTTTATCATGCCATGCCTTTTAGGTTGGAATGCTTTTGGTAGCTCTATAAAGCCAGAAGTATATATTGCAAGCCCAAGAAAAGAAGACCATGAATGA 783 0.447 MLHAQSYTTTATNPILLPNHSFITPKKPISPRRVGSTFCSNLPQSSVTRSHPELVQPKPKLKPFPSPPPKRPQPPPSPAVELPPRVYVGHALYKGKAALTVSPRPPEFTSLDSGAFKISKEGCVLLQFAPSAGPRLYDWNKKQVFSLSVGEIGNLINLGAKESCEFFHEPFLGKSDEGKVRKVLKVEPLHDGSGHMFNLSVQNMPENINENIFIPVTKAEFSVFNSLFNFIMPCLLGWNAFGSSIKPEVYIASPRKEDHE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05111 260 MobiDBLite consensus disorder prediction 34 52 - -
Vifa1g05111 260 MobiDBLite consensus disorder prediction 58 81 - -
Vifa1g05111 260 Gene3D Transcriptional Coactivator Pc4; Chain A 80 257 IPR009044 GO:0003677|GO:0006355
Vifa1g05111 260 Pfam Whirly transcription factor 92 226 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vifa1g05111 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 250 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vifa1g05111 260 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 252 IPR009044 GO:0003677|GO:0006355
Vifa1g05111 260 MobiDBLite consensus disorder prediction 15 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05111 Vifa-Chr1 796961689 796963997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05111 76 248 Whirly Transcription Factor Family AT1G14410 72.832 3.63e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vifa1g05111 Whirly 4.9e-57 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05111 K26559 - csav:115701094 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05111 1 796961689 796963997 Vifa1g05111 1 796961689 796963997 ECH