Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05108 ATGGCAAAACTGTATCATCTCTTCCTTCTGACTATTTTTGTGGTAATCATACCAACATTAGTGCATGCTAACGTCAAAGAGCAAGACGGATATTGGGATTATATATTTCCATCGATTAATGATACATATTGGCGGGCAAAAGCAGCAAGAGCTCAGGAAACAAACGACAAAGCTTATACTCCTGACCCATATGCAGTCTCCGGAAACATGACTTCTAACGTTAGCGGAATGATAATTGACGGCAATAAAGGAAGAAGGAATCTTATGGGGAAAAAACTAGCCAATGCCGGTCCATGTATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCCTAACTGGGCAAATAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACAACGGGTGGAAAAGATGGTCCTATCTATGTGGTAACTGACCCCTCAGATAATGACATGGTTAATCCACGTCCAGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCTTTGTGGATCATCTTTAATCATAGCATGAACATTAGGCTCAACCAGGAACTCATAATGACAAGTGATAAGACCATTGATGGACGAGGAGGTGATGTTGTCATTGCTAACGGTGCTGGTATTACTATCCAGTTCATCAATAATGTGATCATCCACGGGATCAAAGTTTTTGACATTCAGATCGGCAGTGGGGGCCTTATTAGAGATGCTGAGAACCATTTTGGTCTAAGGACTATGAGTGATGGTGATGGAATTTCAATTTTTGGCTCCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGATGGACTCATTGATGTCATCATGGGATCCACCGCTATTACCATCTCCAATGGCCATTTCACAGATCACAACGAGGTGATGTTGTTTGGTGCAAGTGATGGCTATGATGGTGATCAGAAAATGCAGATCACACTTGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATATGGTTTTGTCCATGTGCTTAACAATGATTACACTCACTGGGAAATGTATGCCATTGGCGGTAGTAAACATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCCCCTAACAATGGCTATGCTAAAGAGATAACAAAAAGGGAGTACTCACCAGAGGAAGAGTGGAAAAACTGGCAATGGAGATCAATCAACGATGTCTACATGAACGGAGCATTTTTCAGACAAGCTGGACCTGAGCTGACTAACAGACCATTCTCAAGAAAGGACATGATCAAAGCTAGGCCTGGAACTTTTGTGGGAAGGCTTACTCGTTATTCTGGCAGCCTTAGATGCATAGTAGGAAAGCCTTGTTAG 1359 0.426 MAKLYHLFLLTIFVVIIPTLVHANVKEQDGYWDYIFPSINDTYWRAKAARAQETNDKAYTPDPYAVSGNMTSNVSGMIIDGNKGRRNLMGKKLANAGPCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDNDMVNPRPGTLRHAVTRNGPLWIIFNHSMNIRLNQELIMTSDKTIDGRGGDVVIANGAGITIQFINNVIIHGIKVFDIQIGSGGLIRDAENHFGLRTMSDGDGISIFGSSNVWIDHVSMRNCRDGLIDVIMGSTAITISNGHFTDHNEVMLFGASDGYDGDQKMQITLAFNHFGKRLIQRMPRCRYGFVHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGYAKEITKREYSPEEEWKNWQWRSINDVYMNGAFFRQAGPELTNRPFSRKDMIKARPGTFVGRLTRYSGSLRCIVGKPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05108 452 SUPERFAMILY Pectin lyase-like 103 442 IPR011050 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vifa1g05108 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Vifa1g05108 452 PANTHER PECTATE LYASE 18-RELATED 51 450 IPR045032 GO:0030570
Vifa1g05108 452 SMART amb_all 177 374 IPR002022 -
Vifa1g05108 452 Gene3D - 102 445 IPR012334 -
Vifa1g05108 452 Pfam Pectate lyase, N terminus 40 88 IPR007524 GO:0030570
Vifa1g05108 452 Pfam Pectate lyase 186 368 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05108 Vifa-Chr1 796509906 796512103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05108 5 452 Polysaccharide Lyase AT1G14420 57.792 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05108 K01728 - gmx:100796307 733.791