Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05104 ATGGCAAAAATGTACCATCTCTTCCTTTTGACCATTTTAGTGGTAATCATACCTACATTAGTGCATGCTAATGTCAAAGAGCAACCTTTATACTGGGATAATCTACTTCCATTCATTAATGATACATATTGGCGGGGGAAAGCAGTGACTGCTCAAAAAGCTAACAGCATAGCTTATACACCTGACCCATATGCAGTTTCTGAAAATATGACTTCTGTTGTTAGCGAAATGATAATTGGCGAAAATACAGGAAGAAGGAATCTAGCCGTAAAAAAACTAAAAAAAGGTCATCCATGTATGGCTACAAACCCTATTGATAGATGTTGGAGGTGCGATCCTAATTGGGCAAAGAACCGCAAGAAACTTGCAGATTGTGTGCAAGGTTTTGGAAGAAAGACTACAGGTGGAAAAGCGGGGCGTATCTATGTGGTAACCGATCCTTCAGATAATGACATGGTTAATCTACGTCCAGGTACCCTTAGACATGCAGTTACAAGAAATGGACCTTTGTGGATCATCTTTGCTCGTAGCATGGTCATTAAGCTAAACCAGGAACTCATTATGACAAGTGACAAGACAATTGATGGACGAGGAGCTAATGTTATAATTGCTAGAGTTGGCAATGGGGGGCTAATTAGAGATGCTGAGAACCATTTTGGTCAAAGGACAAGGAGTGATGGTGATGGAATTTCGATTTTTGGCTCTAGCAATGTTTGGATTGACCATGTTTCTATGAGAAACTGCAGAGATGGACTCATTGATGTCATCATGGGATCCACTGCTATTACCATTTCGAATTCCCATTTCACAGATCACAATGAGGCGATGTTGTTTGGTGCAACTGATGGCTACGATGGTGATAAGAAAATGCAAATTACACTTGCATTCAACCATTTTGGTAAGAGATTAATTCAAAGGATGCCAAGGTGCAGATATGGTTTTATCCATGTGCTTAACAATGACTACACTCATTGGGAAATGTATGCAATTGGTGGAAGCCAAAATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCTCCTAACAACCCTCATGCTAAAGAGATAACAAAGAGAGATACATCTGAGGGAGAGTGGAAAAACTGGCAATGGAGATCAATCAATGACGTGTACTTGAACGGGGCATTTTTTAGACAAGGTGGACCTTTGCTGACTAACAGAGCATTTTCAAGAAAGGACATGATCAAAGCTAGGCCTGGAACTTATGTGGGAAGGCTTACTCGCTTTTCTGGTAGTCTTAGATGCAGAACGAGAAACGCTTGCTAG 1287 0.4064 MAKMYHLFLLTILVVIIPTLVHANVKEQPLYWDNLLPFINDTYWRGKAVTAQKANSIAYTPDPYAVSENMTSVVSEMIIGENTGRRNLAVKKLKKGHPCMATNPIDRCWRCDPNWAKNRKKLADCVQGFGRKTTGGKAGRIYVVTDPSDNDMVNLRPGTLRHAVTRNGPLWIIFARSMVIKLNQELIMTSDKTIDGRGANVIIARVGNGGLIRDAENHFGQRTRSDGDGISIFGSSNVWIDHVSMRNCRDGLIDVIMGSTAITISNSHFTDHNEAMLFGATDGYDGDKKMQITLAFNHFGKRLIQRMPRCRYGFIHVLNNDYTHWEMYAIGGSQNPTIISEGNRFIAPNNPHAKEITKRDTSEGEWKNWQWRSINDVYLNGAFFRQGGPLLTNRAFSRKDMIKARPGTYVGRLTRFSGSLRCRTRNAC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05104 428 SMART amb_all 177 351 IPR002022 -
Vifa1g05104 428 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Vifa1g05104 428 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vifa1g05104 428 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vifa1g05104 428 PRINTS Pollen allergen Amb family signature 369 393 IPR018082 -
Vifa1g05104 428 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Vifa1g05104 428 SUPERFAMILY Pectin lyase-like 103 418 IPR011050 -
Vifa1g05104 428 Pfam Pectate lyase 221 345 IPR002022 -
Vifa1g05104 428 PANTHER PECTATE LYASE 18-RELATED 51 424 IPR045032 GO:0030570
Vifa1g05104 428 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Vifa1g05104 428 Gene3D - 102 421 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05104 Vifa-Chr1 795857824 795859928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05104 7 428 Polysaccharide Lyase AT1G14420 55.556 1.66e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05104 K01728 - gmx:100810857 630.172