Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05102 ATGGCAAAAATGTATCATCTCTTCCTTTTCACCATTTTAGTGGTAATCATACCTACATTAGTGCATGCTAATGTCAAAGAGCAACCTTTGTACTGGAATAATCTACTTCCATTCATTAATGATACATATTGGCGGGGGAAAGCAGTGACTGCTCAAAAAGCTAACAGCATAGCTTATACACCCGACCCATATGCAGTTTCTGAAAATATGACTTCTGTTGTTAGCGAAATGATAATTGGCGAAAATACAGGAAGAAGGAATCTAGCCGGAAAAAAACTAAAAAAAGGTCATCCATGTATGGCTACAAACCCCATTGATAGATGTTGGAGGTGCGATCCTAATTGGGCAAAGAACCGCAAGAAACTTGCAGATTGTGTGCAAGGTTTTGGAAGAAAGACTACAGGTGGAAAAGCGGGGCGTATCTATGTGGTAACCGATCCTTCAGATAATGACATGGTTAATCTACGTCCAGGTACCCTTAGACATGCAGTTACAAGAAATGGACCTTTGTGGATCATCTTTGCTCGTAGCATGGTCATTAAGCTAAACCAGGAACTCATTATGACAAGTGACAAGACAATTGATGGACGAGGAGCTACTGTTATCATTGCTAGAGGTGCCGGTTTTACTATCCAGTTCGTCAATAATGTGATCATTCACGGGATCAAAATTTTTGACATTACGGTTGGCAATGGGGGGCTAATTAGAGATGCTGAGAACCATTTTGGTCAAAGGACAAGGAGTGATGGTGATGGAATTTCAATTTTTGGATCCAGCAATGTTTGGATTGACCATGTTTCTATGAGAAACTGCAAAGATGGACTTATTGATATCATCATGGGATCCACTGCTATTACCATTTCGAATTCCCATTTCACAGATCACAATGAGGTGATGTTGTTTGGTGCAACTGATGGCTATGATGGTGATAAGAAAATGCAAGTTACACTTGCATTCAACCATTTTGGTAAGAGATTAATTCAAAGGATGCCAAGGTGCAGATATGGTTTTATCCATGTGCTTAATAATGACTACACTCATTGGGAAATGTATGCAATTGGTGGTAGCAAAAATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCTCCTAATAACCCCCATGCTAAAGAGATAACAAAGAGAGATACATCCGAGGGAGAGTGGAAAAAATGGCAATGGAGATCAATCAATGACGTGTACTTGAACGGAGCATTTTTTAGACAAGGTGGACCTTTGCTAACTAATAGAGCATTCTCAAGAAAGGACATGATCAAAGCTAGGCCTGGAACTTATGTGGGAAGGCTTACTCGTTTTTCTGGTAGCCTTAGATGCAGAACGAAAAATGTTTGCTAG 1356 0.3997 MAKMYHLFLFTILVVIIPTLVHANVKEQPLYWNNLLPFINDTYWRGKAVTAQKANSIAYTPDPYAVSENMTSVVSEMIIGENTGRRNLAGKKLKKGHPCMATNPIDRCWRCDPNWAKNRKKLADCVQGFGRKTTGGKAGRIYVVTDPSDNDMVNLRPGTLRHAVTRNGPLWIIFARSMVIKLNQELIMTSDKTIDGRGATVIIARGAGFTIQFVNNVIIHGIKIFDITVGNGGLIRDAENHFGQRTRSDGDGISIFGSSNVWIDHVSMRNCKDGLIDIIMGSTAITISNSHFTDHNEVMLFGATDGYDGDKKMQVTLAFNHFGKRLIQRMPRCRYGFIHVLNNDYTHWEMYAIGGSKNPTIISEGNRFIAPNNPHAKEITKRDTSEGEWKKWQWRSINDVYLNGAFFRQGGPLLTNRAFSRKDMIKARPGTYVGRLTRFSGSLRCRTKNVC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vifa1g05102 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Vifa1g05102 451 PANTHER PECTATE LYASE 18-RELATED 51 447 IPR045032 GO:0030570
Vifa1g05102 451 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Vifa1g05102 451 Gene3D - 102 444 IPR012334 -
Vifa1g05102 451 Pfam Pectate lyase 187 368 IPR002022 -
Vifa1g05102 451 SUPERFAMILY Pectin lyase-like 97 445 IPR011050 -
Vifa1g05102 451 SMART amb_all 177 374 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05102 Vifa-Chr1 795649819 795651918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05102 5 451 Polysaccharide Lyase AT1G14420 57.918 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05102 K01728 - gmx:100810857 690.649