Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05090 ATGGTTGTGGATCCCTCTCTTCCTCAACCATCCAAAAGAAGAAGAATCAACCACTTTTATTCCATGACAACAATTACAGAGATGAGTGAAAGATTTGGACGAGAGATTCGTGTTTTTGAAACATTTTCACTTTCTCCCACACAAAATGATGCAGCAAACAAAGAAGAGGAGACTGACGAGTTCTACGAGTTCACTGCTGCAGATTATTACAAACTCTTGGGTACTAAAAAAGAAGATAAGTATCTAAAGACTCGAAAACTCCGAGAAGCAGATGAGGCAGCTCGCAGGTCAAAAATAACAAAGGCTGTAATTAGAGTTCGGTTCCCTGATAATCATACATTGGAAGCTACATTTCATCCATCTGAATCCATCCAAAGTTTAATCGATCTCCTCAACAAAGTGATTGCACAACCAGAGAAGCCCTTTTATTTATATACTACTCCGCCTAAGAAGCTGATCAAAGACTTTTCTCAGGATTTCTATACCGTTGGGTTTTGTCCCGGTGCCATCGTGTACTTTTCATATGATGTTTCAAAAGGTAATGGAAGCGATGACGGCCCTTACCTACTAGAAGAAGTGATGTCTTTGAAAGGTGCTATAGAACAAGGTGAGGCATCAGAGCAATTACAGTCTGAACCGACGTCTGCTGAGGCTGTTGCGCAAGCTCCTGCCGTTGAAGAACGGAAACCGGCCGAGAAAAAGATTGTTAAGCCAAAGTGGTTGAAAATGTGA 732 0.4139 MVVDPSLPQPSKRRRINHFYSMTTITEMSERFGREIRVFETFSLSPTQNDAANKEEETDEFYEFTAADYYKLLGTKKEDKYLKTRKLREADEAARRSKITKAVIRVRFPDNHTLEATFHPSESIQSLIDLLNKVIAQPEKPFYLYTTPPKKLIKDFSQDFYTVGFCPGAIVYFSYDVSKGNGSDDGPYLLEEVMSLKGAIEQGEASEQLQSEPTSAEAVAQAPAVEERKPAEKKIVKPKWLKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05090 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 1 243 IPR044232 GO:0032984|GO:0051117
Vifa1g05090 243 Pfam UBX domain 99 167 IPR001012 GO:0005515
Vifa1g05090 243 Gene3D - 91 173 - -
Vifa1g05090 243 CDD UBX2_UBXN9 102 175 - -
Vifa1g05090 243 MobiDBLite consensus disorder prediction 202 224 - -
Vifa1g05090 243 ProSiteProfiles UBX domain profile. 97 173 IPR001012 GO:0005515
Vifa1g05090 243 SUPERFAMILY Ubiquitin-like 77 173 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05090 Vifa-Chr1 793652319 793656541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05090 30 122 C2H2 Transcription Factor Family AT2G01650 31.959 3.19e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05090 K15627 - gmx:100792947 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05090 1 793652319 793656541 Vifa1g05090 1 793652319 793656541 ECH