Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05089 ATGGTTGTGGATCCCTCTCTTCCTCAACCATCCAAAAGAAGAAGAATCAACCACTTTTATTCCATGACAACAATTACAGAGATGAGTGAAAGATTTGGACGAGAGATTCGTGTTTTTGAAACATTTTCACTTTCTCCCACACAAAATGATGCAGCAAACAAAGAGGAGACTGACGAGTTCTACGAGTTCACTGCTGCAGATTATTACAAACTCTTGGGTACTAAAAAAGAAGATAAGTATCTAAAGACTCGAAAACTCCGAGAAGCAGATGAGGCAGCTCGCAGGTCAAAAATAACAAAGGCTGTAATTAGAGTTCGGTTCCCTGATAATCATACATTGGAAGCTACATTTCATCCATCTGAATCCATCCAAAGTTTAATCGATCTCCTCAACAAAGTGATTGCACAACCAGAGAAGCCCTTTTATTTATATACTACTCCGCCTAAGAAGCTGATCAAAGACTTTTCTCAGGATTTCTATACCGTTGGGTTTTGTCCCGGTGCCATCGTGTACTTTTCATATGATGTTTCAAAAGGTAATGGAAGCGATGACGGCCCTTACCTACTAGAAGAAGTGATGTCTTTGAAAGGTGCTATAGAACAAGGTGAGGCATCAGAGCAATTACAGTCTGAACCGACGTCTGCTGAGGCTGTTGCGCAAGCTCCTGCCGTTGAAGAACGGAAACCGGCCGAGAAAAAGATTGTTAAGCCAAAGTGGTTGAAAATGTGA 729 0.4143 MVVDPSLPQPSKRRRINHFYSMTTITEMSERFGREIRVFETFSLSPTQNDAANKEETDEFYEFTAADYYKLLGTKKEDKYLKTRKLREADEAARRSKITKAVIRVRFPDNHTLEATFHPSESIQSLIDLLNKVIAQPEKPFYLYTTPPKKLIKDFSQDFYTVGFCPGAIVYFSYDVSKGNGSDDGPYLLEEVMSLKGAIEQGEASEQLQSEPTSAEAVAQAPAVEERKPAEKKIVKPKWLKM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05089 242 CDD UBX2_UBXN9 101 174 - -
Vifa1g05089 242 MobiDBLite consensus disorder prediction 201 223 - -
Vifa1g05089 242 ProSiteProfiles UBX domain profile. 96 172 IPR001012 GO:0005515
Vifa1g05089 242 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 1 242 IPR044232 GO:0032984|GO:0051117
Vifa1g05089 242 Gene3D - 90 172 - -
Vifa1g05089 242 Pfam UBX domain 98 166 IPR001012 GO:0005515
Vifa1g05089 242 SUPERFAMILY Ubiquitin-like 76 172 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05089 Vifa-Chr1 793652319 793656541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05089 30 121 C2H2 Transcription Factor Family AT2G01650 33.333 1.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05089 K15627 - gmx:100792947 312.383