Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05081 ATGGGGTTGTTGGGTTCTGAGAATGGGAAAGTTGTCGAGAATTGGGATGTGTGTAAATCAAAGGAGAGTAAGAAGAAGAGGAAGAAGAAGAATAAAGAGAATGAGAGTGTGATTAAAGAGGAAAAAACTGGGTGTTGGGTTAGGTTGAGATTTTTTGGTAGCTGCATTTCTTCAAGATCCAAAGTTGATACCTCGGTCAGTGGCACCGGCACCAGTACTCATTATGCTGAAAGCAAATCAACTACTGATACAAGTAGATGCCAACCAACGGCTCCGGTAATCTCTTCCACAACAACTAGTAATGCAGAAAGCAATTCATCCACTTCTAAACTCGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGGAAATTCTCTTTCAACGAGCTTAAGTCGGCGACAAGAAACTTCCGGCCCGAGAGTTTTCTTGGCGAAGGTGGGTTCGGTTGTGTTTTCAAGGGTTGGATCGAAGAAAACGGAACTGCTGCAGTGAAGCCTGGTACAGGGCTTACCGTCGCTGTGAAAACCCTTAACCATGACGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTTTCTTGGCGATTTAGTTCACCAGAACCTTGTTAAACTCGTTGGTTACTGTATTGAAGATAATCAAAGGTTGTTAGTGTACGAATTCATGCCTCGAGGAAGTTTGGAAAATCACTTATTTAGGAGATCTCTGCCTCTTCCATGGTCGATTAGGATGAAAATTGCGTTAGGAGCTGCACAGGGTCTTGCTTTTCTTCACGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCGAATATACTATTAGACGCGGACTACAATGCCAAGCTCTCGGACTTTGGTCTCGCCAAAGATGGTCCGGAAGGTGATAAAACCCATGTGTCTACTCGAGTAATGGGAACCTATGGATACGCAGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGACGTATACAGTTTCGGAGTCGTACTACTTGAGATGTTAACCGGAAGAAGATCTATGGACAAACACCGACCCAACGGTGAACATAATCTTGTTGAATGGGCTCGACCGCATCTAGGAGAACGAAGAAGGTTCTACCGGTTAATAGACCCTCGTCTTGAAGGTCATTTTTCTGTAAAAGGAGCTCAGAAAGCTGCACAACTAGCCGCTCATTGCCTAAGCAGAGATCCAAAAGCGAGACCCCTAATGAGCGAAGTCGTGGAAGCTTTAAAGCCTCTTCCAAATCTCAAAGACATGGCAAGCTCATCATACTATTTCCAAACAATGCAAGCCGATCGGTTTGGAGTGAGTCCAAACTCTAGAAGTGCGCATGTACAAGGAGCATCACTTGCTCGGAATGGACAACAACGAAGGAGCCTTTCGATACCGAATGGTACTCATGTATCTCCTTATCATCATAAGTTTCCCCAACAATCACCTAAACCTAATGTCAAAGCATAG 1479 0.4402 MGLLGSENGKVVENWDVCKSKESKKKRKKKNKENESVIKEEKTGCWVRLRFFGSCISSRSKVDTSVSGTGTSTHYAESKSTTDTSRCQPTAPVISSTTTSNAESNSSTSKLEEELKIASRLRKFSFNELKSATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDNQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAQGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSVKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGVSPNSRSAHVQGASLARNGQQRRSLSIPNGTHVSPYHHKFPQQSPKPNVKA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05081 492 SUPERFAMILY Protein kinase-like (PK-like) 114 416 IPR011009 -
Vifa1g05081 492 Gene3D Transferase(Phosphotransferase) domain 1 222 437 - -
Vifa1g05081 492 FunFam Probable serine/threonine-protein kinase PBL8 222 437 - -
Vifa1g05081 492 PANTHER OS01G0588500 PROTEIN-RELATED 84 419 - -
Vifa1g05081 492 FunFam Serine/threonine-protein kinase BIK1 103 221 - -
Vifa1g05081 492 MobiDBLite consensus disorder prediction 443 472 - -
Vifa1g05081 492 CDD STKc_IRAK 142 419 - -
Vifa1g05081 492 MobiDBLite consensus disorder prediction 443 492 - -
Vifa1g05081 492 Pfam Protein tyrosine and serine/threonine kinase 141 416 IPR001245 GO:0004672|GO:0006468
Vifa1g05081 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa1g05081 492 Gene3D Phosphorylase Kinase; domain 1 110 221 - -
Vifa1g05081 492 MobiDBLite consensus disorder prediction 15 35 - -
Vifa1g05081 492 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524
Vifa1g05081 492 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05081 492 MobiDBLite consensus disorder prediction 60 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05081 Vifa-Chr1 792645201 792648598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05081 83 416 Glycoside Hydrolase AT3G07070 54.006 1.25e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g05081 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05081 - - gmx:100787151 863.988