Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05071 ATGGCTGGAGGTGTTATTCAACAATTGTTGAGGAGGAAACTCCAATCTCATTCTCGGAGTTCTTCTGGCTCTACTGGCAGCAGTTCCTTAAGAGGCCTTGCTTTAATAGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACAACAGCATCTGCTGATGAAGCTGAGCATGGCCTCGCATCTCCACACTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCCATGTCTTTGATATCATACCGTGATTTGGTTGGTGTGGCTTACACAGAAGACGAGGTAAAGGCCATGGCTGCTGAGATTGAGGTGGAAGATGGCCCTAATGATGAGGGTGAGATGTTTTCACGCCCTGGTAAACTCAGTGACCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGGGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCCCTCCTAACCGGTTATCGTGACCCCCCTGCTGGCGTTTCGATCAGAGAGGGATTGCATTACAATCCTTATTTTCCGGGTGGAGCCATTGCCATGCCTAAGATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTCGTGTCATTTTTGTCTTGGGCTGCAGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTTTCATTGGCATTACTTCAAGCTGCATATTATCGCCGTCTTCGATGGTCTGTTCTCAAGTCCCGCAAGTTGGTTCTTGATGTTGTCAACTAG 888 0.4662 MAGGVIQQLLRRKLQSHSRSSSGSTGSSSLRGLALIGAGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEDEVKAMAAEIEVEDGPNDEGEMFSRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05071 295 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 250 294 IPR021157 -
Vifa1g05071 295 FunFam Cytochrome c1, heme protein 55 250 - -
Vifa1g05071 295 PANTHER CYTOCHROME C1 14 293 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 SUPERFAMILY Cytochrome c 59 249 IPR036909 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 231 250 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 250 265 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 129 149 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 200 211 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 64 83 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 162 186 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 84 103 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 PRINTS Cytochrome C1 signature 211 230 IPR002326 GO:0009055|GO:0020037
Vifa1g05071 295 ProSiteProfiles Cytochrome c family profile. 78 185 IPR009056 GO:0009055|GO:0020037
Vifa1g05071 295 Gene3D - 251 294 - -
Vifa1g05071 295 Gene3D - 55 250 IPR036909 GO:0009055|GO:0020037
Vifa1g05071 295 FunFam Cytochrome c1, heme protein, mitochondrial 251 295 - -
Vifa1g05071 295 Pfam Cytochrome C1 family 66 282 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05071 Vifa-Chr1 791798130 791801610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05071 1 295 Chloroplast and Mitochondria Gene Families AT3G27240 84.641 1.27e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05071 K00413 - gmx:100777056 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05071 1 791798130 791801610 Vifa1g05071 1 791798130 791801610 ECH