Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g05070 | ATGGAATCAATAAACCAATCCTTAGACAAATTCTACTCTCCCCACGCGCGCCAATCGCTCGACGAATTGTCTGAGCACTTCACAATCACCGACCCTTCCATTTCAGGCCACCCCATAGTCTTCGCCAGCCACGCGTTCCTCAAGATGACTGGCTTCACGCGCGACGAGGTTGTTGGTAGAACCGGTGCCATGTTTCAAGGTCCAGCGACTTGTCGTAGGAAAGTGATGGAAATTCGTGAAGCTGTTAGGGAGGAAAGAGAGGTTCCGTTACATGGGAGTTCGAGGGTTTGTAGTTCTGTTGCTCATGAATTTGTGTTCCGTTGTTGTCGGAAGGAAGTTTGTTCTGAATCTTTGGCGGAACTTACTCGGGTTTCTTCGGCTAATCAGGTGTTGGAACATGATGTTTCGGTTAAGCTCTCAACTACACTTGCAGAGCTACACTTATTAGAATTGGAGAGTGAAGAAGAGCCACGCGAGGCAAGTGGCGATGAGAGGAGAAGTGCTGCTACGGCGATGGACAACATCTTTTCTGTGCTAACCCACTATAGCGAGTTGACGGGAAAATTGGTGTGTAGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTAGCTCTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATCTGCCAGACATGCCTATTGTTTATGCCAGTGACACCTTCATGAAATTGACAGGTTATGCGAGAGATGAGGTATTGGGCCACAACTGTAGATTTTTAGGTGGAAGAGATACTGATGCCTCAACTCTACATCTGATAAAGGAGAGCATCAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTACTTCACATCTCACCTGTTCGGGATGCTTCTGGAAAGGTAGCATACTTTGTTGGAGTCCAAATAGAAGACGACTATAAAAACGAGGATTTTAGGCGGTGTTGGAGACCTGACATGAAGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGCGGAGTTTATCCATGTCTGCTGGGTCGTCAAAGACATAG | 1080 | 0.4556 | MESINQSLDKFYSPHARQSLDELSEHFTITDPSISGHPIVFASHAFLKMTGFTRDEVVGRTGAMFQGPATCRRKVMEIREAVREEREVPLHGSSRVCSSVAHEFVFRCCRKEVCSESLAELTRVSSANQVLEHDVSVKLSTTLAELHLLELESEEEPREASGDERRSAATAMDNIFSVLTHYSELTGKLVCRKRCSIPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDTFMKLTGYARDEVLGHNCRFLGGRDTDASTLHLIKESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDDYKNEDFRRCWRPDMKQLSVVGVVKVAVRSLSMSAGSSKT | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g05070 | 359 | Gene3D | PAS domain | 217 | 343 | - | - | |
| Vifa1g05070 | 359 | Pfam | PAS domain | 37 | 87 | IPR000014 | - | |
| Vifa1g05070 | 359 | Pfam | PAS domain | 217 | 316 | IPR000014 | - | |
| Vifa1g05070 | 359 | SMART | pac_2 | 280 | 322 | IPR001610 | - | |
| Vifa1g05070 | 359 | FunFam | protein TWIN LOV 1 | 217 | 354 | - | - | |
| Vifa1g05070 | 359 | ProSiteProfiles | PAS repeat profile. | 35 | 61 | IPR000014 | - | |
| Vifa1g05070 | 359 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 27 | 87 | IPR035965 | - | |
| Vifa1g05070 | 359 | NCBIfam | PAS domain S-box protein | 230 | 315 | IPR000014 | - | |
| Vifa1g05070 | 359 | CDD | PAS | 39 | 61 | IPR000014 | - | |
| Vifa1g05070 | 359 | PANTHER | PROTEIN TWIN LOV 1 | 2 | 88 | - | - | |
| Vifa1g05070 | 359 | CDD | PAS | 226 | 315 | IPR000014 | - | |
| Vifa1g05070 | 359 | ProSiteProfiles | PAS repeat profile. | 230 | 252 | IPR000014 | - | |
| Vifa1g05070 | 359 | Gene3D | PAS domain | 8 | 112 | - | - | |
| Vifa1g05070 | 359 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 220 | 316 | IPR035965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g05070 | Vifa-Chr1 | 791379012 | 791383089 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g05070 | 19 | 88 | AGC Kinase Gene Family | AT5G58140 | 40.000 | 3.86e-14 | 72.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g05070 | - | - | gmx:100799855 | 446.817 |