Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05054 ATGAGGTACTTTTACTTTGATGTTTTGATTCTTTCATGGTTTTTATTGTTCATCTCAAATAGTCATGAGTTAGAACAAGATCAAAACCAAGGTTTGTTAGAATTAAGAATGTTTTTGGAGTTTCCTTCTTCATTACAAATTATGGAAAATTACAATGTTGATTTTTGTTATCTTCCTTCATCTTCAAATTTGAGCATTAAATGTGAAGATAATTCAATAATTGAGCTCAAAATTTTTGGTGATAAATCTTTGAAACCCTTAAGTTTCAATGGATTTGCAATTCCAAATCAAACACTATCCATGAATTTCTCAATTGATTCATTTTTCATGACATTGACAAAGTTGAAAACCCTAAAGGTTCTTACTTTGGTTTCATTAGGGATTTGGGGGAAGCTTCCTAATAAGATTGAATCTCTTACTTTGCTTCAAGTTTTGGATTTGAGTTCAAATTTCATATATGGTTCCATTCCACCAAAAATCTCAAAAATGGTGAATCTTCAATCACTATCACTTGATCAAAATTATTTCAACACCACTTTGCCTAATTGGTTTGATTCTTTGTTTAACCTAACTTTCTTGAGTTTGAAGAAAAACCACTTCAAGGGTTCATTTCCGTTTTCGCTTTGTAAAATCAAGAAACTCGAAGTGATTTCTTTGTCGCAAAACGAATTATCGGGCGAATTGCCTAGTTTTGAATCTCTTAGTGGTTTACATGTTTTGGATTTGAGAGAAAACTGTTTCGAATTCGATTTACCGCGTCTGCCGAAATCCGTGGTCACGGTTTTGTTTAGCAATAACTCATTTTCGGGAGAGATTCCGAAGAAGTTGGGCGAATTGAATCATCTTCAACATTTAGATCTTTCGTCGAATTGTCTTGAGGGCACGCCGCCTTCGACATTGTTCTCTCTGTCGAATTTAAGTTATTTGAATCTAGCAAACAATGTGCTAAGTGGTGAGTTTTCTGATAAGCTTCATTGTGGTGGAAAACTCGGTTATGTCGATATTTCTAGCAACAGGTTAAGTGGTTTACTTCCTTCCTGTTTAGCGAATAGTTCTGATGGTAGAGTCGTTAGATATGGTAGAAATTGTTTATCTGTTGAGCCTCAGAATCAGCAGAGAGGTTCTTATTGTAAGGATTTTGGTTCCAGATGGAAGAAATTCATGATATTGAAAGTGATAGCATTACTGGCTATTGTTTTTGGATTTGTTCTTGTGGTTTTGGTGTTTGGAGTTTTTGTGTGTAAAAAATGTCATTTCATGAAGAAAAGTAGAAAGGATGTGTCGCTAAAGATTGTTCTAGATAAATCCGCGACCGGTGTTTCATCACAAGTTCTTGCAGATGCAAGAATTATTTCTCAAGCAGTGAAGCTAGGGACACAAACTAGTCCAACCTATAGACAATTTTCTATCCAAGAGTTGAAGGAAGCTACCAAAAACTTTAGTTTGTTAACTTGTATTGGTGATGGCTCCATAGTAAAGCTGTATAAAGGTAAACTAGAAAATGGAGCTTATGTGGTGATAAGATCATTTGTTCTGTCAAAGAAATGTTCAATTCAAAACCTTAAAGCTAAGTTGGATTTACTCTCAAAGCTTGAACATCCGAATTTGGTTAGTCTTTTGGGTCATTGCATTGATGGCGGCGTACAAGATGATTCGAGCACACAAAAACTTCATCTTGTATATGAATATGTGCCAAACGGAGATTTTCATACTCGTCTATCAGAATATTCTGCAGAAAAAGCACTTAAGTGGCCCGATAGACTAGCGATTTTGATTGGTGTTGCAAAGGCAGTTCATTTCTTACATACTGGTGTTATACCGGGATGTTTTAGCAACGAATTAAAAACAAAGAATGTGTTACTTGATGAACACTGCATTCCTAAACTAAGTGACTATGGTATGTCCATTATCAAAGAAGATATCGAAAAGTTTGAGACAAAGAGTGATAAGAAGTTAAAATCATGTCAAAGGACAAAAACTGATAACGATGTTTACAATTTCGGATTCATATTGTTGGAATCACTTGTTGGACCCATTACATGTGACAAAGGAGAAACATATTTCCTAAATGAAAAGGCATCTTTTGGAAGTGAAGACGGTAGAAGAAAGATTGTTGATCCAATAGTGTTGACAACATGTTGTCAAGAATCATTATCAATTGCAATATCTATAACAACAAAATGTATATCTCAAGAGTCTTCATCTCGTCCTTCTTTTGAGGATGTTCTATGGAACTTACAGTATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCAGATTAA 2292 0.3486 MRYFYFDVLILSWFLLFISNSHELEQDQNQGLLELRMFLEFPSSLQIMENYNVDFCYLPSSSNLSIKCEDNSIIELKIFGDKSLKPLSFNGFAIPNQTLSMNFSIDSFFMTLTKLKTLKVLTLVSLGIWGKLPNKIESLTLLQVLDLSSNFIYGSIPPKISKMVNLQSLSLDQNYFNTTLPNWFDSLFNLTFLSLKKNHFKGSFPFSLCKIKKLEVISLSQNELSGELPSFESLSGLHVLDLRENCFEFDLPRLPKSVVTVLFSNNSFSGEIPKKLGELNHLQHLDLSSNCLEGTPPSTLFSLSNLSYLNLANNVLSGEFSDKLHCGGKLGYVDISSNRLSGLLPSCLANSSDGRVVRYGRNCLSVEPQNQQRGSYCKDFGSRWKKFMILKVIALLAIVFGFVLVVLVFGVFVCKKCHFMKKSRKDVSLKIVLDKSATGVSSQVLADARIISQAVKLGTQTSPTYRQFSIQELKEATKNFSLLTCIGDGSIVKLYKGKLENGAYVVIRSFVLSKKCSIQNLKAKLDLLSKLEHPNLVSLLGHCIDGGVQDDSSTQKLHLVYEYVPNGDFHTRLSEYSAEKALKWPDRLAILIGVAKAVHFLHTGVIPGCFSNELKTKNVLLDEHCIPKLSDYGMSIIKEDIEKFETKSDKKLKSCQRTKTDNDVYNFGFILLESLVGPITCDKGETYFLNEKASFGSEDGRRKIVDPIVLTTCCQESLSIAISITTKCISQESSSRPSFEDVLWNLQYAAQVQATADADQKSD 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05054 763 PANTHER UNNAMED PRODUCT 111 678 - -
Vifa1g05054 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 763 - -
Vifa1g05054 763 SMART LRR_typ_2 279 302 IPR003591 -
Vifa1g05054 763 SMART LRR_typ_2 139 162 IPR003591 -
Vifa1g05054 763 SMART LRR_typ_2 163 186 IPR003591 -
Vifa1g05054 763 Gene3D Ribonuclease Inhibitor 25 256 IPR032675 -
Vifa1g05054 763 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 158 251 - -
Vifa1g05054 763 Gene3D Phosphorylase Kinase; domain 1 441 563 - -
Vifa1g05054 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 443 563 - -
Vifa1g05054 763 Gene3D Ribonuclease Inhibitor 257 371 IPR032675 -
Vifa1g05054 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 258 382 - -
Vifa1g05054 763 Gene3D Transferase(Phosphotransferase) domain 1 564 763 - -
Vifa1g05054 763 Pfam Leucine rich repeat 265 316 IPR001611 GO:0005515
Vifa1g05054 763 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Vifa1g05054 763 SUPERFAMILY L domain-like 112 362 - -
Vifa1g05054 763 SUPERFAMILY Protein kinase-like (PK-like) 460 746 IPR011009 -
Vifa1g05054 763 Pfam Protein tyrosine and serine/threonine kinase 483 744 IPR001245 GO:0004672|GO:0006468
Vifa1g05054 763 ProSiteProfiles Protein kinase domain profile. 480 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05054 Vifa-Chr1 787504376 787507598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05054 8 691 Miscellaneous Gene Families AT5G14210 53.026 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa1g05054 PK_Tyr_Ser-Thr 2.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05054 - - gmx:100799183 1056.97