Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05035 ATGGGAGCACCGAAGAAAAGTGCCGCTAGGGTTTCAGAGGATCACGATGACCTCGTTCGCGTTCCGTTACAAGCGATTCTCATAGCGGATAGTTTTACTACAAAGTTCAGACCTATCACTCTTGAACGCCCCAAAGTGCTTTTGCCGTTGGTGAATGTTCCGATGATAAATTACACATTGACATGGCTTGAATCAGCTGGTGTAGAAGAGGTTTTTGTTTTCTGTTGTGCTCATGCGAAACAGGTGATTAACTATTTGGAGAAGTCTGAGTGGTTTTCTCAACCTAATTTCACTGTAACGACTATAGAGTCGCAGAATTCTGTTAGTGCTGGAGATGCACTGCGTGTTGTCTACGAGCGCAATGTGATACAAGGAGATTTTGTTCTTATCAGTGGAGATACTGTAAGCAACATGTCACTTACTCAAGCACTTTTAGAACATAAAGAAAGAAAGAAGAAAGATAGTAATGCTGTAATGACCATGGTTATCAAACGGTCTAAAACCCATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAACTTTTCATGGCTATTGATCCGAATACCAAGCAACTTTTGTCTTATGAGGATAAGGCAGACTATTCAAAAGGCACTCTACATCTTGAAAATTCATTGCTTGCTGATAATCCTTCCCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCGCCAGAAGTCCTTACCCTATTTACAGACAATTTTGACTACCAACATCTTCGGCGTCATTTTGTCAAGGGACTGCTAGTTGATGATATAATGGGATATAAAATTTTTGTTCATGAAATCCGCTCTGACTATGCTGCAAGGATTGATAATTTCCGAAGCTATGACGCTGTCAGCAAAGATATAATTCATAGATGGACATATCCACTGGTCCCCGATGTTATGAATTTTGGCAACACAGCTACTAAGCTTGAAAGACAGGGAATATATCGTGCCTCAGAAATTTCGCAATCACAATCAGCTGTTGTCGGCCCGTTCTCTGTTATAGGATCTGGCACCAAAATTGGCAACAACAGTAACATTTTAAAATCTGTTGTTGGAGGAGGATGTAAAATCGGGTCAAACGTACACATAGAGGGGTGTTATATATGGGACAATGTCACCATAGAAGATGGCTGTGAACTTAGGCATGCCATTGTATGTGATGGGGTGATTATGAAATCAGGATCTGTTCTGGAACCTGGTGTAGTATTGTCTTTTAAGGTTACAGTTGGGCAGGAGTTTGTTGTTCCTCCTTATTCACAAGTATCGCTACTACAGCAGCCAATTGAGGAAGATAGCGATGAAGAGCTTGAATATGCTGATAGTACTAGTGTCATCACCAGCACAGTGGATAAATCAGATGGAGAGTATGCTTCAGAGTTATCAGATGCACATTTTAACTCCACTTCTGAGCTAGGTTTTGGTGGGGTTGGTTATGTTTGGCCTAAATGTGAAGGAGGGCTTGAGGAAGAGTGGAGGCATTCAGTGGTGCCTATTACTGAAGATAAAATTTTGGAGGCAGTGAAAGCTATGGAAAATGAACTGGAGTTAATTCATGATGGCAATACTCTTCCACCTTCTGGGGAGCTGATACCTAATTCTAATGATTCAGATGATGATGATAATGACGATTCAAGAGATGACTTTGATAAGGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAACATACAAGACGTCCATTTGACTTTAGAAATCAACTCTTTGAAGTTGTCATACAATAAGATAACTGCAGATTGTGCTGGAGCTTTATTTTATGCAATGATGAAGTATGCTGTAGAAATGCCCCATAGTTCAGCTGATAGCCTGATTCAGAATGTAAATGCCATACTTACAAAATGGAAAAAGGTTCTTAAATCCTACCTAAACGATATGGACGAGCAGATTGAAGTGATTCTAAAGTTTGAAGAAATGTGTTTGGAATCTGCTAAGGAATTTGCTCCGTTGTTCACGAAGATTTTGCACTACCTGTATAATGAAGATATTATAGAAGAAGATGCTATTTTGAGTTGGGAAGATGAGAAAAAGGACGCAGATGAGTCGGATAAAGTATTTGTTAACCAAGCCCAAAAATTAATTCAATGGCTAAAAGAGGCTCCTGAAGAAGATGACGACGAGGAAGAGTAG 2172 0.4029 MGAPKKSAARVSEDHDDLVRVPLQAILIADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHAKQVINYLEKSEWFSQPNFTVTTIESQNSVSAGDALRVVYERNVIQGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKTHPAIHQSRLGTDELFMAIDPNTKQLLSYEDKADYSKGTLHLENSLLADNPSLSLHHDKQDCYIDICSPEVLTLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIRSDYAARIDNFRSYDAVSKDIIHRWTYPLVPDVMNFGNTATKLERQGIYRASEISQSQSAVVGPFSVIGSGTKIGNNSNILKSVVGGGCKIGSNVHIEGCYIWDNVTIEDGCELRHAIVCDGVIMKSGSVLEPGVVLSFKVTVGQEFVVPPYSQVSLLQQPIEEDSDEELEYADSTSVITSTVDKSDGEYASELSDAHFNSTSELGFGGVGYVWPKCEGGLEEEWRHSVVPITEDKILEAVKAMENELELIHDGNTLPPSGELIPNSNDSDDDDNDDSRDDFDKEVEATFLRAVHENIQDVHLTLEINSLKLSYNKITADCAGALFYAMMKYAVEMPHSSADSLIQNVNAILTKWKKVLKSYLNDMDEQIEVILKFEEMCLESAKEFAPLFTKILHYLYNEDIIEEDAILSWEDEKKDADESDKVFVNQAQKLIQWLKEAPEEDDDEEE 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05035 723 Gene3D - 544 722 - -
Vifa1g05035 723 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 386 IPR029044 -
Vifa1g05035 723 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Vifa1g05035 723 SUPERFAMILY Trimeric LpxA-like enzymes 267 427 IPR011004 -
Vifa1g05035 723 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 12 303 IPR029044 -
Vifa1g05035 723 MobiDBLite consensus disorder prediction 525 555 - -
Vifa1g05035 723 FunFam Trimeric LpxA-like enzyme 316 449 - -
Vifa1g05035 723 SMART 542_3 630 717 IPR003307 GO:0005515
Vifa1g05035 723 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Vifa1g05035 723 Pfam eIF4-gamma/eIF5/eIF2-epsilon 642 721 IPR003307 GO:0005515
Vifa1g05035 723 CDD W2_eIF2B_epsilon 558 714 IPR044123 GO:0005085|GO:0031369
Vifa1g05035 723 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 722 - -
Vifa1g05035 723 SUPERFAMILY ARM repeat 555 714 IPR016024 -
Vifa1g05035 723 Pfam Nucleotidyl transferase 27 164 IPR005835 GO:0009058
Vifa1g05035 723 Gene3D Hexapeptide repeat proteins 319 458 - -
Vifa1g05035 723 ProSiteProfiles W2 domain profile. 550 721 IPR003307 GO:0005515
Vifa1g05035 723 CDD LbH_eIF2B_epsilon 341 419 - -
Vifa1g05035 723 MobiDBLite consensus disorder prediction 541 555 - -
Vifa1g05035 723 FunFam Translation initiation factor eIF-2B epsilon subunit 545 722 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05035 1 714 Eukaryotic Initiation Factors Gene Family AT2G34970 62.707 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05035 K03240 - gmx:100784894 1194.87